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MaayanLab / Playbook-Workflow-Builder

A repository for the Playbook Workflow Builder project.
https://playbook-workflow-builder.cloud
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Use case 11 issues #129

Open u8sand opened 11 months ago

u8sand commented 11 months ago

Use case 11: Related Proteins/Metabolites across DCCs

Few steps did not work for this workflow, e.g., - Mano

  • [ ] Reformat and graph plot of StringDB PPI didn’t display or took long time. - Mano
  • [ ] The references in the sentences related to MetGENE metanodes seem to be unformatted. - Mano
  • [ ] MetGENE metabolites didn’t seem to work (not a valid JSON). - Mano
  • [ ] MetGENE studies table displayed by 1st column was showing as <a href … instead of as a clickable URL. - Mano
u8sand commented 11 months ago

@mano-at-sdsc

mano-at-sdsc commented 11 months ago

@u8sand @susrinivasan MetGENE metabolites is working now (issue was due to wrong path in a file on the server-side).

mano-at-sdsc commented 11 months ago

@susrinivasan Re studies table, kegg compound ID column, either remove html tags in REST output, or just use

          <td>`${val.KEGG_COMPOUND_ID}`</td> in metgene_study_table/index.tsx instead of

          <!-- <td><a href = {`https://www.kegg.jp/entry/${val.KEGG_COMPOUND_ID}`} target = "_blank">{val.KEGG_COMPOUND_ID}</a></td> -->

Ref REST URL for testing: https://bdcw.org/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,ALDOB/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json