MaayanLab / appyter-catalog

A catalog of appyter notebooks
https://appyters.maayanlab.cloud/
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Fix blue tags below the search engine bar and in appyters #405

Closed AviMaayan closed 4 years ago

AviMaayan commented 4 years ago

These are the tags that should be listed below the search bar: RNA-seq scRNA-seq Enrichr Machine Learning TCGA Harmonizome Drugmonizome L1000 Compare Sets microRNAs Kinome Aging

u8sand commented 4 years ago

Avi, I've done this but some of these terms don't match up with existing tags. So I'm trying to clean up the tags, let me know if there is something missing / wrong.

I ran a text-similarity clustering on the tags to get:

Below is the substitutions I plan on applying to the tags (left is what it was, and right is what I'm replacing it with)

s_g = {
  'Aging, Dementia, and Traumatic Brain Injury Study': {'Aging'},
  'bar chart': {},
  'bioinformatics': {},
  'bokeh': {},
  'canvas': {},
  'Databases': {},
  'Drug binding': {'Pharmacology'},
  'drug screen': {'Pharmacology'},
  'drug set libraries': {'Pharmacology'},
  'Drugmonizome ETL Script': {'Drugmonizome', 'ETL Script'},
  'drugs': {'Pharmacology'},
  'enrichment analysis': {'Enrichment Analysis'},
  'gene correlation network': {},
  'Gene Expression, Age, Mouse,Human': {'Aging'}
  'gene network analysis': {},
  'gene predictions': {'Predictions'},
  'Gene Singatures': {},
  'Harmonizome ETL Script': {'Harmonizome', 'ETL Script'},
  'KINOMEscan': {'KINOMEscan', 'Kinome'},
  'L1000FWD': {'L1000', 'L1000FWD'},
  'machine learning': {'Machine Learning'},
  'manhattan plot': {},
  'mimickers': {'Pharmacology'},
  'miRNA targets': {'microRNAs'},
  'Protein kinases': {'Kinome'},
  'reversers': {'Pharmacology'},
  'RNA-Seq': {'RNA-seq'},
  'RNAseq': {'RNA-seq'},
  'scatter plot': {},
  'scatterplot': {},
  'small molecules': {},
  'SuperVenn diagrams': {},
  'The Cancer Genome Atlas': {'TCGA'},
  'The Human Protein Atlas (RNA-Seq)': {'The Human Protein Atlas', 'RNA-seq'},
  'UpSet plots': {},
  'Venn diagrams': {},
  'Visualization': {},
  "Fisher's Exact Test": {},
}

The empty sets mean I would be removing those tags.