It seems that that the transcript information is incomplete for the mouse transcript-level expression matrix (mouse_hiseq_eid_1.0.h5).
The data/expression matrix has quantitation for 178,136 transcripts, however the meta/ensemblid and meta/transcriptlength objects only have 98,492 entries each.
The dimensionality between these same objects in the human_hiseq_eid_1.0.h5, however, appear to be concordant.
It seems that that the transcript information is incomplete for the mouse transcript-level expression matrix (
mouse_hiseq_eid_1.0.h5).The
data/expressionmatrix has quantitation for 178,136 transcripts, however themeta/ensemblidandmeta/transcriptlengthobjects only have 98,492 entries each.The dimensionality between these same objects in the
human_hiseq_eid_1.0.h5, however, appear to be concordant.