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MaayanLab / archs4

ARCHS4 RNA-seq processing scripts and web server pages.
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Update blurb on the landing page #26

Closed AviMaayan closed 1 year ago

AviMaayan commented 1 year ago

All RNA-seq and ChIP-seq sample and signature search (ARCHS4) (https://maayanlab.cloud/archs4/) is a resource that provides access to gene and transcript counts uniformly processed from all human and mouse RNA-seq experiments from GEO and SRA. The ARCHS4 website provides the uniformly processed data for download and programmatic access in H5 format, and as a 3-dimensional interactive viewer and search engine. Users can search and browse the data by metadata enhanced annotations, and can submit their own gene sets for search. Subsets of selected samples can be downloaded as a tab delimited text file that is ready for loading into the R programming environment. To generate the ARCHS4 resource, the kallisto aligner is applied in an efficient parallelized cloud infrastructure. Human and mouse samples are aligned against the most recent Ensembl annotation (Ensembl 107).

lachmann12 commented 1 year ago

Done, 107 is not the latest annotation anymore. 108 was published end of October. Cadence is a bit weird because 107 took them more than a year.