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MaayanLab / archs4

ARCHS4 RNA-seq processing scripts and web server pages.
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Latest pipeline to create ARCHS4 Version 2.1.2 h5 files? #28

Closed seraphzl closed 4 months ago

seraphzl commented 1 year ago

Hi, What is the pipeline used to create human_matrix_v2.1.2.h5 and mouse_matrix_v2.1.2.h5 ? Is it the same as the pipeline mentioned in the 2018 paper? Thanks.

lachmann12 commented 1 year ago

The pipeline is rewritten and iptimized, but the basic setup is similar to the one described in the paper.. The main difference is the updated genome annotation. This adds more genes.