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MaayanLab / biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
http://biojupies.cloud
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Only two classes in many GSEs - suggestion of enhancement #23

Open lubianat opened 6 years ago

lubianat commented 6 years ago

Hello,

I have been using biojupies satisfactorily for a while now, and I notice that for many studies, there are only two groups: one control and one perturbation.

Automatic labeling of classes is hard, and the underlying code does a nice job of identifying controls.

For binary cases (only one perturbation), it would be practical to have a "Tag all non-assigned samples to Perturbation" button.

It is minor, but might save many clicks for many users.

Thanks,

denis-torre commented 6 years ago

Thanks for the suggestion, @lubianat! I will look into adding this functionality soon.