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MaayanLab / cfde_gene_pages

Common Fund Gene Landing Pages as a Dashboard
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Several CFDE gene pages do not come up when you search on a gene that should be there #161

Open ChristopheLambert opened 2 years ago

ChristopheLambert commented 2 years ago

I went through each of the CFDE-supported sites listed on https://cfde-gene-pages.cloud/gene, and the following do not bring back search results:

  1. [x] IDG Pharos -- there is a working endpoint, e.g. search for MTHFR via: https://pharos.nih.gov/search?q=MTHFR
  2. [x] UC Davis mouse knockout project -- there is a working endpoint, e.g. : https://www.mousephenotype.org/data/search?term=MTHFR&type=gene
  3. [x] MetGENE -- there is a working endpoint, e.g. https://sc-cfdewebdev.sdsc.edu/MetGENE/metGene.php?GeneInfoStr=MTHFR&GeneIDType=SYMBOL&species=hsa&anatomy=NA&disease=NA&phenotype=NA
  4. [ ] exRNA -- the site is listed as one of the gene pages, but, as expected, one cannot search for a gene on it (just miRNA). However, when you enter a miRNA search term in the aggregator, (e.g. hsa-miR-320a) exRNA does not come up as having a match, when it is in this database, and can be found via: https://exrna-atlas.org/exat/censusResults?identifiers=hsa-miR-320a&library=miRNA
sherry-jenkins commented 2 years ago

Hello @maxim-k - could you please look into this today. Many thanks!

cc: @AviMaayan