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MaayanLab / enrichr_issues

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can a pathway be uploaded to Enrichr for use? #18

Closed stinner21 closed 3 years ago

stinner21 commented 3 years ago

specifically, the MSigDB Hallmark 2020 Geneset converted to murine orthologs

http://bioinf.wehi.edu.au/software/MSigDB/

publicly available online?

AviMaayan commented 3 years ago

It is already there under pathways... image

stinner21 commented 3 years ago

So this version of MSIgDB is curated from human gene sets but the link above in the original comment contains an rdata file of the MSigDB hallmark pathways converted to murine orthologs.

Which is potentially useful to those with mouse rna seq datasets.

just a suggestion, interested in your thoughts or whether mouse rna seq data can be analyzed with human pathways

cybluetree commented 3 years ago

It would be great if we could upload libraries. For example, KEGG, GO have updated versions. Is it possible to add this function so that we can use the latest version of database we are interested in? Thanks.

AviMaayan commented 3 years ago

You can use this new Appyter if you have customized library and/or background: https://appyters.maayanlab.cloud/#/Independent_Enrichment_Analysis