MaayanLab / enrichr_issues

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is it possible to search all libraries together via the API #46

Closed chubukov closed 1 year ago

chubukov commented 1 year ago

The only examples on the https://maayanlab.cloud/Enrichr/help#api page involve doing enrichment analysis on only a single gene set library. Of course it's possible to loop over the libraries one at a time but this is orders of magnitude less efficient than the performance one gets with through the browser interface, so it doesn't seem great.

Is there a way to specify multiple libraries in the API? Or is there a nice example of how to download all the libraries and run the enrichment offline?

Thanks.

AviMaayan commented 1 year ago

This link might help: https://appyters.maayanlab.cloud/#/Independent_Enrichment_Analysis

chubukov commented 1 year ago

Thanks Avi, I was able to get that running.