Describe the bug
When connecting to the database using listEnrichrDbs() command, i receive the following error
Error in (function (..., deparse.level = 1, make.row.names = TRUE, stringsAsFactors = FALSE, :
numbers of columns of arguments do not match
To Reproduce
Steps to reproduce the behavior:
Open R and input the following code
library(enrichR)websiteLive <- getOption("enrichR.live")if (websiteLive) {+ listEnrichrSites()+ setEnrichrSite("Enrichr")+ }
Enrichr ... Connection is Live!
FlyEnrichr ... Connection is Live!
WormEnrichr ... Connection is Live!
YeastEnrichr ... Connection is Live!
FishEnrichr ... Connection is Live!
OxEnrichr ... Connection is Live!
Connection changed to https://maayanlab.cloud/Enrichr/
Connection is Live!
if (websiteLive) dbs <- listEnrichrDbs()
Error in (function (..., deparse.level = 1, make.row.names = TRUE, stringsAsFactors = FALSE, : numbers of columns of arguments do not match
Expected behavior
A list of different databases should appear
Additional context
I used this code yesterday (June 6th) for a different pathway analysis and it worked fine, today (June 7th) there is an error with the listEnrichrDbs() command
sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.2 LTS
Describe the bug When connecting to the database using
listEnrichrDbs()
command, i receive the following error Error in (function (..., deparse.level = 1, make.row.names = TRUE, stringsAsFactors = FALSE, : numbers of columns of arguments do not matchTo Reproduce Steps to reproduce the behavior: Open R and input the following code
library(enrichR)
websiteLive <- getOption("enrichR.live")
if (websiteLive) {
+ listEnrichrSites()
+ setEnrichrSite("Enrichr")
+ }
Enrichr ... Connection is Live! FlyEnrichr ... Connection is Live! WormEnrichr ... Connection is Live! YeastEnrichr ... Connection is Live! FishEnrichr ... Connection is Live! OxEnrichr ... Connection is Live! Connection changed to https://maayanlab.cloud/Enrichr/ Connection is Live!if (websiteLive) dbs <- listEnrichrDbs()
Error in (function (..., deparse.level = 1, make.row.names = TRUE, stringsAsFactors = FALSE, : numbers of columns of arguments do not match
Expected behavior A list of different databases should appear
Additional context I used this code yesterday (June 6th) for a different pathway analysis and it worked fine, today (June 7th) there is an error with the
listEnrichrDbs()
commandsessionInfo()
R version 4.2.2 (2022-10-31) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 22.04.2 LTSMatrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so
locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8
[6] LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] enrichR_3.2 ggrepel_0.9.3 ggplot2_3.4.2
loaded via a namespace (and not attached): [1] Rcpp_1.0.10 pillar_1.9.0 compiler_4.2.2 WriteXLS_6.4.0 tools_4.2.2 digest_0.6.31 evaluate_0.21 lifecycle_1.0.3 [9] tibble_3.2.1 gtable_0.3.3 pkgconfig_2.0.3 rlang_1.1.1 cli_3.6.1 rstudioapi_0.14 curl_5.0.0 yaml_2.3.7
[17] xfun_0.39 fastmap_1.1.1 withr_2.5.0 dplyr_1.1.2 httr_1.4.6 knitr_1.43 generics_0.1.3 vctrs_0.6.2
[25] grid_4.2.2 tidyselect_1.2.0 glue_1.6.2 R6_2.5.1 fansi_1.0.4 rmarkdown_2.22 magrittr_2.0.3 scales_1.2.1
[33] htmltools_0.5.5 colorspace_2.1-0 utf8_1.2.3 munsell_0.5.0 rjson_0.2.21