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MaayanLab / signature-commons-ui

A front-end UI for demoing API integration
https://amp.pharm.mssm.edu/sigcom/
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Program "IDG" likely wrong - More programs exist #100

Closed AviMaayan closed 5 years ago

AviMaayan commented 5 years ago

We don't have gene sets or signatures generated by the IDG. Also, the LINCS program is missing, so having only IDG is weird.

These libraries can be associated with the following programs:

Achilles_fitness_decrease - Achilles Achilles_fitness_increase - Achilles

Allen_Brain_Atlas_down - Allen_Brain_Atlas Allen_Brain_Atlas_up - Allen_Brain_Atlas

DepMap_WG_CRISPR_Screens_Broad_CellLines_2019 - DepMap DepMap_WG_CRISPR_Screens_Sanger_CellLines_2019 - DepMap

ENCODE_and_ChEA_Consensus_TFs_from_ChIP-X - ENCODE ENCODE_Histone_Modifications_2013 - ENCODE ENCODE_Histone_Modifications_2015 - ENCODE ENCODE_TF_ChIP-seq_2014 - ENCODE ENCODE_TF_ChIP-seq_2015 - ENCODE

Epigenomics_Roadmap_HM_ChIP-seq - Epigenomics_Roadmap

GTEx_Tissue_Sample_Gene_Expression_Profiles_down - GTEx GTEx_Tissue_Sample_Gene_Expression_Profiles_up - GTEx

LINCS_L1000_Chem_Pert_down - LINCS LINCS_L1000_Chem_Pert_up - LINCS LINCS_L1000_Kinase_Perturbations_down - LINCS LINCS_L1000_Kinase_Perturbations_up - LINCS LINCS_L1000_Ligand_Perturbations_down - LINCS LINCS_L1000_Ligand_Perturbations_up - LINCS

MGI_Mammalian_Phenotype_2013 - KOMP MGI_Mammalian_Phenotype_2017 - KOMP MGI_Mammalian_Phenotype_Level_3 - KOMP MGI_Mammalian_Phenotype_Level_4 - KOMP

NURSA_Human_Endogenous_Complexome - NURSA

jeevangelista commented 5 years ago

Updated database.