Build issue on macOS 13.1 using M1 system

artusakdamar commented 1 year ago

I was trying to install Macaulay2 by using homebrew but I keep getting the error:

The Homebrew tap Macaulay2/tap/fflas-ffpack prevents Sage from building https://github.com/Macaulay2/homebrew-tap/issues/68

Somebody here said it can be fixed over here https://github.com/Macaulay2/homebrew-tap/commit/877fc15c4f8775218b07241305af033f50924079

But I have no idea what I'm supposed to do. Should I copy and paste the code given in the link to my terminal? (I tried copying and pasting it but it didn't work). By the way my mac version is macOS 13.1

DanGrayson commented 1 year ago

@mahrud

mahrud commented 1 year ago

That isn't the full error. Could you provide the full error message along with whether you use an M1 mac or not?

artusakdamar commented 1 year ago

@mahrud Thanks for responding. My mac is M1. The code is pasted below.

(base) ########### ~ % brew install Macaulay2/tap/M2
==> Tapping macaulay2/tap
Cloning into '/opt/homebrew/Library/Taps/macaulay2/homebrew-tap'...
remote: Enumerating objects: 1480, done.
remote: Counting objects: 100% (368/368), done.
remote: Compressing objects: 100% (197/197), done.
remote: Total 1480 (delta 175), reused 339 (delta 168), pack-reused 1112
Receiving objects: 100% (1480/1480), 283.67 KiB | 480.00 KiB/s, done.
Resolving deltas: 100% (719/719), done.
Tapped 20 formulae (38 files, 389.4KB).
==> Fetching dependencies for macaulay2/tap/macaulay2: bison, cmake, ninja, brotli, c-ares, icu4c, libnghttp2, libuv, ca-certificates, openssl@1.1, npm, pkg-config, bdw-gc, xz, lz4, zstd, boost, eigen, gmp, mpfr, ntl, flint, factory, givaro, libomp, fflas-ffpack, frobby, gdbm, libatomic_ops, libffi, mpfi, mpsolve, node, readline, tbb, cohomcalg, csdp, glpk, fourtitwo, cddlib, gfan, lrs, nauty, normaliz and topcom
==> Fetching bison
==> Downloading https://ghcr.io/v2/homebrew/core/bison/manifests/3.8.2
######################################################################## 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/bison/blobs/sha256:f877d389e78b
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching cmake
==> Downloading https://ghcr.io/v2/homebrew/core/cmake/manifests/3.25.2
######################################################################## 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/cmake/blobs/sha256:9b84d2b9844a
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching ninja
==> Downloading https://ghcr.io/v2/homebrew/core/ninja/manifests/1.11.1
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==> Downloading https://ghcr.io/v2/homebrew/core/ninja/blobs/sha256:6202ee2d9cdb
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching brotli
==> Downloading https://ghcr.io/v2/homebrew/core/brotli/manifests/1.0.9
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==> Downloading https://ghcr.io/v2/homebrew/core/brotli/blobs/sha256:dda0779953c
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching c-ares
==> Downloading https://ghcr.io/v2/homebrew/core/c-ares/manifests/1.19.0
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==> Downloading https://ghcr.io/v2/homebrew/core/c-ares/blobs/sha256:509c92f0a18
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching icu4c
==> Downloading https://ghcr.io/v2/homebrew/core/icu4c/manifests/72.1
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==> Downloading https://ghcr.io/v2/homebrew/core/icu4c/blobs/sha256:0666e999875e
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching libnghttp2
==> Downloading https://ghcr.io/v2/homebrew/core/libnghttp2/manifests/1.51.0-1
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==> Downloading https://ghcr.io/v2/homebrew/core/libnghttp2/blobs/sha256:cee5995
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Fetching libuv
==> Downloading https://ghcr.io/v2/homebrew/core/libuv/manifests/1.44.2-1
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==> Downloading https://ghcr.io/v2/homebrew/core/libuv/blobs/sha256:2653486daddc
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching ca-certificates
==> Downloading https://ghcr.io/v2/homebrew/core/ca-certificates/manifests/2023-
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==> Downloading https://ghcr.io/v2/homebrew/core/ca-certificates/blobs/sha256:11
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching openssl@1.1
==> Downloading https://ghcr.io/v2/homebrew/core/openssl/1.1/manifests/1.1.1s
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==> Downloading https://ghcr.io/v2/homebrew/core/openssl/1.1/blobs/sha256:3a7812
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching node
==> Downloading https://ghcr.io/v2/homebrew/core/node/manifests/19.5.0
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==> Downloading https://ghcr.io/v2/homebrew/core/node/blobs/sha256:2bd805596d044
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching pkg-config
==> Downloading https://ghcr.io/v2/homebrew/core/pkg-config/manifests/0.29.2_3
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==> Downloading https://ghcr.io/v2/homebrew/core/pkg-config/blobs/sha256:3ff612c
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching bdw-gc
==> Downloading https://ghcr.io/v2/homebrew/core/bdw-gc/manifests/8.2.2
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==> Downloading https://ghcr.io/v2/homebrew/core/bdw-gc/blobs/sha256:8f459fdcd68
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching xz
==> Downloading https://ghcr.io/v2/homebrew/core/xz/manifests/5.4.1
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==> Downloading https://ghcr.io/v2/homebrew/core/xz/blobs/sha256:26ede511c3cc726
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching lz4
==> Downloading https://ghcr.io/v2/homebrew/core/lz4/manifests/1.9.4
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==> Downloading https://ghcr.io/v2/homebrew/core/lz4/blobs/sha256:cd29e40287b0a2
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching zstd
==> Downloading https://ghcr.io/v2/homebrew/core/zstd/manifests/1.5.2-3
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==> Downloading https://ghcr.io/v2/homebrew/core/zstd/blobs/sha256:92f953ed8a8c7
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Fetching boost
==> Downloading https://ghcr.io/v2/homebrew/core/boost/manifests/1.81.0_1
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==> Downloading https://ghcr.io/v2/homebrew/core/boost/blobs/sha256:8a4a21f28eea
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching eigen
==> Downloading https://ghcr.io/v2/homebrew/core/eigen/manifests/3.4.0_1
######################################################################## 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/eigen/blobs/sha256:211fd7f1d58b
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Fetching gmp
==> Downloading https://ghcr.io/v2/homebrew/core/gmp/manifests/6.2.1_1
######################################################################## 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/gmp/blobs/sha256:2436cd120e5678
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Fetching mpfr
==> Downloading https://ghcr.io/v2/homebrew/core/mpfr/manifests/4.2.0
######################################################################## 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/mpfr/blobs/sha256:e8d923fe4d128
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Fetching ntl
==> Downloading https://ghcr.io/v2/homebrew/core/ntl/manifests/11.5.1
######################################################################## 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/ntl/blobs/sha256:8495ee2f2c8360
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching flint
==> Downloading https://ghcr.io/v2/homebrew/core/flint/manifests/2.9.0
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==> Downloading https://ghcr.io/v2/homebrew/core/flint/blobs/sha256:8f7dbbc531e8
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Fetching macaulay2/tap/factory
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/fact
==> Downloading from https://objects.githubusercontent.com/github-production-rel
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==> Fetching macaulay2/tap/givaro
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/giva
==> Downloading from https://objects.githubusercontent.com/github-production-rel
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==> Fetching libomp
==> Downloading https://ghcr.io/v2/homebrew/core/libomp/manifests/15.0.7
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==> Downloading https://ghcr.io/v2/homebrew/core/libomp/blobs/sha256:8c5c7b912a0
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Fetching macaulay2/tap/fflas-ffpack
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/ffla
==> Downloading from https://objects.githubusercontent.com/github-production-rel
######################################################################## 100.0%
==> Fetching macaulay2/tap/frobby
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/frob
==> Downloading from https://objects.githubusercontent.com/github-production-rel
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==> Fetching gdbm
==> Downloading https://ghcr.io/v2/homebrew/core/gdbm/manifests/1.23
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==> Downloading https://ghcr.io/v2/homebrew/core/gdbm/blobs/sha256:a7321472cc9ff
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==> Fetching libatomic_ops
==> Downloading https://ghcr.io/v2/homebrew/core/libatomic_ops/manifests/7.6.14
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==> Downloading https://ghcr.io/v2/homebrew/core/libatomic_ops/blobs/sha256:9231
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==> Fetching libffi
==> Downloading https://ghcr.io/v2/homebrew/core/libffi/manifests/3.4.4
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==> Downloading https://ghcr.io/v2/homebrew/core/libffi/blobs/sha256:66d9dcb2182
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==> Fetching mpfi
==> Downloading https://ghcr.io/v2/homebrew/core/mpfi/manifests/1.5.4
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==> Downloading https://ghcr.io/v2/homebrew/core/mpfi/blobs/sha256:7401897771e7e
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Fetching macaulay2/tap/mpsolve
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/mpso
==> Downloading from https://objects.githubusercontent.com/github-production-rel
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==> Fetching readline
==> Downloading https://ghcr.io/v2/homebrew/core/readline/manifests/8.2.1
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==> Downloading https://ghcr.io/v2/homebrew/core/readline/blobs/sha256:fba42a9bd
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==> Fetching tbb
==> Downloading https://ghcr.io/v2/homebrew/core/tbb/manifests/2021.8.0
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==> Downloading https://ghcr.io/v2/homebrew/core/tbb/blobs/sha256:59e5097745fcb2
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==> Fetching macaulay2/tap/cohomcalg
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/coho
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==> Fetching macaulay2/tap/csdp
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/csdp
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==> Fetching glpk
==> Downloading https://ghcr.io/v2/homebrew/core/glpk/manifests/5.0
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==> Downloading https://ghcr.io/v2/homebrew/core/glpk/blobs/sha256:2fb927d88ff2f
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==> Fetching macaulay2/tap/fourtitwo
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/four
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==> Fetching cddlib
==> Downloading https://ghcr.io/v2/homebrew/core/cddlib/manifests/0.94m
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==> Fetching macaulay2/tap/gfan
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/gfan
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==> Fetching macaulay2/tap/lrs
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/lrs-
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==> Fetching nauty
==> Downloading https://ghcr.io/v2/homebrew/core/nauty/manifests/2.7r4
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==> Downloading https://ghcr.io/v2/homebrew/core/nauty/blobs/sha256:b6c48fe168b2
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==> Fetching macaulay2/tap/normaliz
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/norm
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==> Fetching macaulay2/tap/topcom
==> Downloading https://github.com/Macaulay2/homebrew-tap/releases/download/topc
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==> Fetching macaulay2/tap/macaulay2
==> Downloading https://github.com/Macaulay2/M2/archive/refs/tags/release-1.21.t
==> Downloading from https://codeload.github.com/Macaulay2/M2/tar.gz/refs/tags/r
       #   #   #     #                                           -=O=-        
==> Installing macaulay2 from macaulay2/tap
==> Installing dependencies for macaulay2/tap/macaulay2: bison, cmake, ninja, brotli, c-ares, icu4c, libnghttp2, libuv, ca-certificates, openssl@1.1, npm, pkg-config, bdw-gc, xz, lz4, zstd, boost, eigen, gmp, mpfr, ntl, flint, factory, givaro, libomp, fflas-ffpack, frobby, gdbm, libatomic_ops, libffi, mpfi, mpsolve, node, readline, tbb, cohomcalg, csdp, glpk, fourtitwo, cddlib, gfan, lrs, nauty, normaliz and topcom
==> Installing macaulay2/tap/macaulay2 dependency: bison
==> Pouring bison--3.8.2.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/bison/3.8.2: 99 files, 3.7MB
==> Installing macaulay2/tap/macaulay2 dependency: cmake
==> Pouring cmake--3.25.2.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/cmake/3.25.2: 3,167 files, 45.9MB
==> Installing macaulay2/tap/macaulay2 dependency: ninja
==> Pouring ninja--1.11.1.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/ninja/1.11.1: 10 files, 435.3KB
==> Installing macaulay2/tap/macaulay2 dependency: brotli
==> Pouring brotli--1.0.9.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/brotli/1.0.9: 25 files, 2.3MB
==> Installing macaulay2/tap/macaulay2 dependency: c-ares
==> Pouring c-ares--1.19.0.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/c-ares/1.19.0: 87 files, 675.9KB
==> Installing macaulay2/tap/macaulay2 dependency: icu4c
==> Pouring icu4c--72.1.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/icu4c/72.1: 263 files, 78.4MB
==> Installing macaulay2/tap/macaulay2 dependency: libnghttp2
==> Pouring libnghttp2--1.51.0.arm64_ventura.bottle.1.tar.gz
🍺  /opt/homebrew/Cellar/libnghttp2/1.51.0: 13 files, 737.9KB
==> Installing macaulay2/tap/macaulay2 dependency: libuv
==> Pouring libuv--1.44.2.arm64_ventura.bottle.1.tar.gz
🍺  /opt/homebrew/Cellar/libuv/1.44.2: 51 files, 3.5MB
==> Installing macaulay2/tap/macaulay2 dependency: ca-certificates
==> Pouring ca-certificates--2023-01-10.all.bottle.tar.gz
==> Regenerating CA certificate bundle from keychain, this may take a while...
🍺  /opt/homebrew/Cellar/ca-certificates/2023-01-10: 3 files, 216.9KB
==> Installing macaulay2/tap/macaulay2 dependency: openssl@1.1
==> Pouring openssl@1.1--1.1.1s.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/openssl@1.1/1.1.1s: 8,101 files, 18MB
==> Installing macaulay2/tap/macaulay2 dependency: npm
==> Pouring node--19.5.0.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/node/19.5.0: 2,153 files, 54MB
==> Installing macaulay2/tap/macaulay2 dependency: pkg-config
==> Pouring pkg-config--0.29.2_3.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/pkg-config/0.29.2_3: 11 files, 676.2KB
==> Installing macaulay2/tap/macaulay2 dependency: bdw-gc
==> Pouring bdw-gc--8.2.2.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/bdw-gc/8.2.2: 73 files, 1.7MB
==> Installing macaulay2/tap/macaulay2 dependency: xz
==> Pouring xz--5.4.1.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/xz/5.4.1: 95 files, 1.7MB
==> Installing macaulay2/tap/macaulay2 dependency: lz4
==> Pouring lz4--1.9.4.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/lz4/1.9.4: 22 files, 680.1KB
==> Installing macaulay2/tap/macaulay2 dependency: zstd
==> Pouring zstd--1.5.2.arm64_ventura.bottle.3.tar.gz
🍺  /opt/homebrew/Cellar/zstd/1.5.2: 31 files, 2.2MB
==> Installing macaulay2/tap/macaulay2 dependency: boost
==> Pouring boost--1.81.0_1.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/boost/1.81.0_1: 15,831 files, 481.6MB
==> Installing macaulay2/tap/macaulay2 dependency: eigen
==> Pouring eigen--3.4.0_1.all.bottle.tar.gz
🍺  /opt/homebrew/Cellar/eigen/3.4.0_1: 546 files, 8.4MB
==> Installing macaulay2/tap/macaulay2 dependency: gmp
==> Pouring gmp--6.2.1_1.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/gmp/6.2.1_1: 21 files, 3.2MB
==> Installing macaulay2/tap/macaulay2 dependency: mpfr
==> Pouring mpfr--4.2.0.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/mpfr/4.2.0: 30 files, 3MB
==> Installing macaulay2/tap/macaulay2 dependency: ntl
==> Pouring ntl--11.5.1.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/ntl/11.5.1: 269 files, 8.3MB
==> Installing macaulay2/tap/macaulay2 dependency: flint
==> Pouring flint--2.9.0.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/flint/2.9.0: 150 files, 18MB
==> Installing macaulay2/tap/macaulay2 dependency: factory
==> Pouring factory-4.3.0_1.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/factory/4.3.0_1: 110 files, 6.9MB
==> Installing macaulay2/tap/macaulay2 dependency: givaro
==> Pouring givaro-4.2.0.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/givaro/4.2.0: 236 files, 2.3MB
==> Installing macaulay2/tap/macaulay2 dependency: libomp
==> Pouring libomp--15.0.7.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/libomp/15.0.7: 7 files, 1.6MB
==> Installing macaulay2/tap/macaulay2 dependency: fflas-ffpack
==> Pouring fflas-ffpack-2.5.0.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/fflas-ffpack/2.5.0: 194 files, 2.6MB
==> Installing macaulay2/tap/macaulay2 dependency: frobby
==> Pouring frobby-0.9.5_4.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/frobby/0.9.5_4: 9 files, 2.3MB
==> Installing macaulay2/tap/macaulay2 dependency: gdbm
==> Pouring gdbm--1.23.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/gdbm/1.23: 24 files, 1MB
==> Installing macaulay2/tap/macaulay2 dependency: libatomic_ops
==> Pouring libatomic_ops--7.6.14.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/libatomic_ops/7.6.14: 82 files, 728KB
==> Installing macaulay2/tap/macaulay2 dependency: libffi
==> Pouring libffi--3.4.4.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/libffi/3.4.4: 17 files, 724.8KB
==> Installing macaulay2/tap/macaulay2 dependency: mpfi
==> Pouring mpfi--1.5.4.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/mpfi/1.5.4: 21 files, 530KB
==> Installing macaulay2/tap/macaulay2 dependency: mpsolve
==> Pouring mpsolve-3.2.1_4.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/mpsolve/3.2.1_4: 33 files, 1MB
==> Installing macaulay2/tap/macaulay2 dependency: node
==> Pouring node--19.5.0.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/node/19.5.0: 2,153 files, 54MB
==> Installing macaulay2/tap/macaulay2 dependency: readline
==> Pouring readline--8.2.1.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/readline/8.2.1: 50 files, 1.7MB
==> Installing macaulay2/tap/macaulay2 dependency: tbb
==> Pouring tbb--2021.8.0.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/tbb/2021.8.0: 224 files, 3.1MB
==> Installing macaulay2/tap/macaulay2 dependency: cohomcalg
==> Pouring cohomcalg-0.32_1.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/cohomcalg/0.32_1: 5 files, 418KB
==> Installing macaulay2/tap/macaulay2 dependency: csdp
==> Pouring csdp-6.2.0_10.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/csdp/6.2.0_10: 10 files, 395.2KB
==> Installing macaulay2/tap/macaulay2 dependency: glpk
==> Pouring glpk--5.0.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/glpk/5.0: 179 files, 3.5MB
==> Installing macaulay2/tap/macaulay2 dependency: fourtitwo
==> Pouring fourtitwo-1.6.9_1.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/fourtitwo/1.6.9_1: 167 files, 5.8MB
==> Installing macaulay2/tap/macaulay2 dependency: cddlib
==> Pouring cddlib--0.94m.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/cddlib/0.94m: 134 files, 4.3MB
==> Installing macaulay2/tap/macaulay2 dependency: gfan
==> Pouring gfan-0.6.2_10.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/gfan/0.6.2_10: 60 files, 3.5MB
==> Installing macaulay2/tap/macaulay2 dependency: lrs
==> Pouring lrs-070_1.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/lrs/070_1: 5 files, 252.9KB
==> Installing macaulay2/tap/macaulay2 dependency: nauty
==> Pouring nauty--2.7r4.arm64_ventura.bottle.tar.gz
🍺  /opt/homebrew/Cellar/nauty/2.7r4: 76 files, 8.5MB
==> Installing macaulay2/tap/macaulay2 dependency: normaliz
==> Pouring normaliz-3.9.4.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/normaliz/3.9.4: 30 files, 10.9MB
==> Installing macaulay2/tap/macaulay2 dependency: topcom
==> Pouring topcom-1.1.2_5.arm64_monterey.bottle.tar.gz
🍺  /opt/homebrew/Cellar/topcom/1.1.2_5: 151 files, 43.6MB
==> Installing macaulay2/tap/macaulay2
==> Patching
==> git clone https://github.com/Macaulay2/M2-emacs.git M2/Macaulay2/editors/ema
==> git clone https://github.com/Macaulay2/memtailor.git M2/submodules/memtailor
==> git clone https://github.com/Macaulay2/mathic.git M2/submodules/mathic
==> git clone https://github.com/Macaulay2/mathicgb.git M2/submodules/mathicgb
==> cmake -GNinja -SM2 -BM2/BUILD/build-brew -DBUILD_NATIVE=OFF -DCMAKE_PREFIX_P
==> cmake --build M2/BUILD/build-brew --target M2-core M2-emacs M2-highlightjs
==> cmake --build M2/BUILD/build-brew --target install-Macaulay2Doc
Last 15 lines from /Users/muberraallahverdi/Library/Logs/Homebrew/macaulay2/07.cmake:
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currentString:1:1:(3):[2]: error: installPackage: 2 error(s) occurred running examples for package Macaulay2Doc
dmat lu qq PLU
FAILED: Macaulay2/packages/CMakeFiles/install-Macaulay2Doc usr-dist/arm64-Darwin-macOS-13.1/lib/Macaulay2/Macaulay2Doc/.installed /tmp/macaulay2-20230130-21144-qr69ho/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages/CMakeFiles/install-Macaulay2Doc /tmp/macaulay2-20230130-21144-qr69ho/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/lib/Macaulay2/Macaulay2Doc/.installed 
cd /tmp/macaulay2-20230130-21144-qr69ho/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages && /tmp/macaulay2-20230130-21144-qr69ho/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/bin/M2 -q --stop --silent --no-preload --no-threads -e errorDepth=3 -e debugLevel=0 -e "installPackage(\"Macaulay2Doc\", Verbose => false, RerunExamples => false, CheckDocumentation => true, IgnoreExampleErrors => false, RemakeAllDocumentation => false, InstallPrefix => \"/tmp/macaulay2-20230130-21144-qr69ho/M2-release-1.21/M2/BUILD/build-brew/usr-dist/\", UserMode => false, SeparateExec => true, DebuggingMode => true)" -e "\"info-\"|\"Macaulay2Doc\" << Macaulay2Doc#\"test number\" << close" -e "exit 0" && gzip -nf9 /tmp/macaulay2-20230130-21144-qr69ho/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/info/Macaulay2Doc.info
ninja: build stopped: subcommand failed.

Do not report this issue to Homebrew/brew or Homebrew/core!

These open issues may also help:
The Homebrew tap Macaulay2/tap/fflas-ffpack prevents Sage from building https://github.com/Macaulay2/homebrew-tap/issues/68

d-torrance commented 1 year ago

It's weird that it's going through the entire build process... Why isn't it just using the bottle that was already built?

I think the error is likely from the findProgram/runProgram examples failing because the gfan bottle is broken. I ran into the same thing when building the M1 Macaulay2 bottle last month (see https://github.com/Macaulay2/homebrew-tap/pull/162#issuecomment-1354763295).

artusakdamar commented 1 year ago

@d-torrance Thanks for answering. I'm not really familiar with working from a terminal. I read the link you gave and there you said we should rebuild gfan. But I'm not sure how to do that. How do you rebuild gfan? What should I enter into the terminal for that?

d-torrance commented 1 year ago

Now that I think about it some more, I thought we fixed that gfan issue, so I'm not 100% sure that that's what's wrong.

The log you posted only shows the tail end and not the specifically what happened. Notice the message Last 15 lines from /Users/muberraallahverdi/Library/Logs/Homebrew/macaulay2/07.cmake:. Does that file still exist on your system? If so, then its full contents would be helpful.

mahrud commented 1 year ago

Could you try running brew test gfan?

artusakdamar commented 1 year ago

@d-torrance Yes it does exist:

2023-02-01 10:03:26 +0000

cmake
--build
M2/BUILD/build-brew
--target
install-Macaulay2Doc

[0/4] cd /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages && /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/bin/M2 -q --stop --silent --no-preload --no-threads -e errorDepth=3 -e debugLevel=0 -e "installPackage(\"FirstPackage\", Verbose => false, RerunExamples => false, CheckDocumentation => true, IgnoreExampleErrors => false, RemakeAllDocumentation => false, InstallPrefix => \"/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/\", UserMode => false, SeparateExec => true, DebuggingMode => true)" -e "\"info-\"|\"FirstPackage\" << FirstPackage#\"test number\" << close" -e "exit 0" && gzip -nf9 /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/info/FirstPackage.info
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[1/4] cd /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages && /opt/homebrew/Cellar/cmake/3.25.2/bin/cmake -E copy /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages/../editors/highlightjs/highlight.js /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/Macaulay2/Style
[2/4] cd /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages && /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/bin/M2 -q --stop --silent --no-preload --no-threads -e errorDepth=3 -e debugLevel=0 -e "installPackage(\"Style\", Verbose => false, RerunExamples => false, CheckDocumentation => true, IgnoreExampleErrors => false, RemakeAllDocumentation => false, InstallPrefix => \"/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/\", UserMode => false, SeparateExec => true, DebuggingMode => true)" -e "\"info-\"|\"Style\" << Style#\"test number\" << close" -e "exit 0" && gzip -nf9 /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/info/Style.info
[3/4] cd /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages && /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/bin/M2 -q --stop --silent --no-preload --no-threads -e errorDepth=3 -e debugLevel=0 -e "installPackage(\"Macaulay2Doc\", Verbose => false, RerunExamples => false, CheckDocumentation => true, IgnoreExampleErrors => false, RemakeAllDocumentation => false, InstallPrefix => \"/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/\", UserMode => false, SeparateExec => true, DebuggingMode => true)" -e "\"info-\"|\"Macaulay2Doc\" << Macaulay2Doc#\"test number\" << close" -e "exit 0" && gzip -nf9 /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/info/Macaulay2Doc.info
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 -- capture failed; retrying ...
 -- making example results for "runProgram"                                 
 ulimit -c unlimited; ulimit -t 700; ulimit -s 8192; ulimit -n 512;  cd /private/tmp/M2-40039-0/17-rundir/; GC_MAXIMUM_HEAP_SIZE=400M "/private/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/bin/M2-binary" -q --no-randomize --no-readline --silent --stop --print-width 77 <"/private/tmp/M2-40039-0/0_run__Program.m2" >>"/private/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/doc/Macaulay2/Macaulay2Doc/example-output/_run__Program.errors" 2>&1
/private/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/doc/Macaulay2/Macaulay2Doc/example-output/_run__Program.errors:0:1: (output file) error: Macaulay2 exited with status code 1
/private/tmp/M2-40039-0/0_run__Program.m2:0:1: (input file)
M2: *** Error 1
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 ulimit -c unlimited; ulimit -t 700; ulimit -s 8192; ulimit -n 512;  cd /private/tmp/M2-40039-0/73-rundir/; GC_MAXIMUM_HEAP_SIZE=400M "/private/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/bin/M2-binary" -q --no-randomize --no-readline --silent --stop --print-width 77 <"/private/tmp/M2-40039-0/0_find__Program.m2" >>"/private/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/doc/Macaulay2/Macaulay2Doc/example-output/_find__Program.errors" 2>&1
/private/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/doc/Macaulay2/Macaulay2Doc/example-output/_find__Program.errors:0:1: (output file) error: Macaulay2 exited with status code 1
/private/tmp/M2-40039-0/0_find__Program.m2:0:1: (input file)
M2: *** Error 1
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currentString:1:1:(3):[2]: error: installPackage: 2 error(s) occurred running examples for package Macaulay2Doc
dmat lu qq PLU
FAILED: Macaulay2/packages/CMakeFiles/install-Macaulay2Doc usr-dist/arm64-Darwin-macOS-13.1/lib/Macaulay2/Macaulay2Doc/.installed /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages/CMakeFiles/install-Macaulay2Doc /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/lib/Macaulay2/Macaulay2Doc/.installed 
cd /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/Macaulay2/packages && /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/arm64-Darwin-macOS-13.1/bin/M2 -q --stop --silent --no-preload --no-threads -e errorDepth=3 -e debugLevel=0 -e "installPackage(\"Macaulay2Doc\", Verbose => false, RerunExamples => false, CheckDocumentation => true, IgnoreExampleErrors => false, RemakeAllDocumentation => false, InstallPrefix => \"/tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/\", UserMode => false, SeparateExec => true, DebuggingMode => true)" -e "\"info-\"|\"Macaulay2Doc\" << Macaulay2Doc#\"test number\" << close" -e "exit 0" && gzip -nf9 /tmp/macaulay2-20230201-37603-oc8xqw/M2-release-1.21/M2/BUILD/build-brew/usr-dist/common/share/info/Macaulay2Doc.info
ninja: build stopped: subcommand failed.

HOMEBREW_VERSION: 3.6.20
ORIGIN: https://github.com/Homebrew/brew
HEAD: 344d32bf7f40183359592ef81ca6486e0587981b
Last commit: 13 days ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 2a94737cfccfc5f87dcea905232b29eeb09091fd
Core tap last commit: 3 hours ago
Core tap branch: master
HOMEBREW_PREFIX: /opt/homebrew
HOMEBREW_CASK_OPTS: []
HOMEBREW_MAKE_JOBS: 8
HOMEBREW_NO_BOOTSNAP: set
Homebrew Ruby: 2.6.10 => /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/ruby
CPU: octa-core 64-bit arm_firestorm_icestorm
Clang: 14.0.0 build 1400
Git: 2.37.1 => /Library/Developer/CommandLineTools/usr/bin/git
Curl: 7.85.0 => /usr/bin/curl
macOS: 13.1-arm64
CLT: 14.2.0.0.1.1668646533
Xcode: N/A
Rosetta 2: false

HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk
MAKEFLAGS: -j8
CMAKE_PREFIX_PATH: /opt/homebrew/opt/bison:/opt/homebrew/opt/icu4c:/opt/homebrew/opt/libomp:/opt/homebrew/opt/libffi:/opt/homebrew/opt/openssl@1.1:/opt/homebrew/opt/readline:/opt/homebrew
CMAKE_INCLUDE_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
MACOSX_DEPLOYMENT_TARGET: 13
PKG_CONFIG_PATH: /opt/homebrew/opt/bdw-gc/lib/pkgconfig:/opt/homebrew/opt/icu4c/lib/pkgconfig:/opt/homebrew/opt/xz/lib/pkgconfig:/opt/homebrew/opt/lz4/lib/pkgconfig:/opt/homebrew/opt/zstd/lib/pkgconfig:/opt/homebrew/opt/gmp/lib/pkgconfig:/opt/homebrew/opt/mpfr/lib/pkgconfig:/opt/homebrew/opt/factory/lib/pkgconfig:/opt/homebrew/opt/givaro/lib/pkgconfig:/opt/homebrew/opt/fflas-ffpack/lib/pkgconfig:/opt/homebrew/opt/libatomic_ops/lib/pkgconfig:/opt/homebrew/opt/libffi/lib/pkgconfig:/opt/homebrew/opt/mpfi/lib/pkgconfig:/opt/homebrew/opt/brotli/lib/pkgconfig:/opt/homebrew/opt/c-ares/lib/pkgconfig:/opt/homebrew/opt/libnghttp2/lib/pkgconfig:/opt/homebrew/opt/libuv/lib/pkgconfig:/opt/homebrew/opt/openssl@1.1/lib/pkgconfig:/opt/homebrew/opt/readline/lib/pkgconfig:/opt/homebrew/opt/tbb/lib/pkgconfig:/opt/homebrew/opt/cddlib/lib/pkgconfig:/opt/homebrew/opt/eigen/share/pkgconfig
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/opt/homebrew/Library/Homebrew/os/mac/pkgconfig/13
HOMEBREW_GIT: git
HOMEBREW_SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk
ACLOCAL_PATH: /opt/homebrew/opt/bison/share/aclocal:/opt/homebrew/share/aclocal
PATH: /opt/homebrew/Library/Homebrew/shims/mac/super:/opt/homebrew/opt/bison/bin:/opt/homebrew/opt/cmake/bin:/opt/homebrew/opt/ninja/bin:/opt/homebrew/opt/node/bin:/opt/homebrew/opt/pkg-config/bin:/opt/homebrew/opt/icu4c/bin:/opt/homebrew/opt/xz/bin:/opt/homebrew/opt/lz4/bin:/opt/homebrew/opt/zstd/bin:/opt/homebrew/opt/givaro/bin:/opt/homebrew/opt/fflas-ffpack/bin:/opt/homebrew/opt/gdbm/bin:/opt/homebrew/opt/brotli/bin:/opt/homebrew/opt/c-ares/bin:/opt/homebrew/opt/openssl@1.1/bin:/opt/homebrew/opt/cohomcalg/bin:/opt/homebrew/opt/csdp/bin:/opt/homebrew/opt/glpk/bin:/opt/homebrew/opt/fourtitwo/bin:/opt/homebrew/opt/cddlib/bin:/opt/homebrew/opt/gfan/bin:/opt/homebrew/opt/lrs/bin:/opt/homebrew/opt/nauty/bin:/opt/homebrew/opt/normaliz/bin:/opt/homebrew/opt/topcom/bin:/usr/bin:/bin:/usr/sbin:/sbin

artusakdamar commented 1 year ago

@mahrud I did run that. This was the output:

(base) muberraallahverdi@192 ~ % brew test gfan 
Warning: test is a developer command, so
Homebrew's developer mode has been automatically turned on.
To turn developer mode off, run brew developer off

==> Installing 'bundler' gem
Fetching bundler-2.3.26.gem
Fetching gem metadata from https://rubygems.org/.......
Fetching concurrent-ruby 1.1.10
Fetching minitest 5.17.0
Fetching zeitwerk 2.6.6
Fetching public_suffix 5.0.1
Installing zeitwerk 2.6.6
Fetching ast 2.4.2
Installing public_suffix 5.0.1
Installing minitest 5.17.0
Fetching bindata 2.4.14
Fetching msgpack 1.6.0
Installing concurrent-ruby 1.1.10
Using bundler 2.3.26
Fetching byebug 11.1.3
Installing ast 2.4.2
Fetching connection_pool 2.3.0
Installing bindata 2.4.14
Installing msgpack 1.6.0 with native extensions
Fetching did_you_mean 1.6.3
Installing byebug 11.1.3 with native extensions
Installing did_you_mean 1.6.3
Fetching diff-lcs 1.5.0
Installing connection_pool 2.3.0
Fetching docile 1.4.0
Installing diff-lcs 1.5.0
Fetching unf_ext 0.0.8.2
Installing docile 1.4.0
Fetching regexp_parser 2.6.1
Installing regexp_parser 2.6.1
Installing unf_ext 0.0.8.2 with native extensions
Fetching hana 1.3.7
Fetching hpricot 0.8.6
Installing hana 1.3.7
Fetching json 2.6.3
Fetching uri_template 0.7.0
Fetching mime-types-data 3.2022.0105
Installing json 2.6.3 with native extensions
Installing uri_template 0.7.0
Fetching net-http-digest_auth 1.4.1
Installing net-http-digest_auth 1.4.1
Fetching racc 1.6.2
Installing hpricot 0.8.6 with native extensions
Fetching rubyntlm 0.6.3
Installing racc 1.6.2 with native extensions
Installing mime-types-data 3.2022.0105
Fetching webrick 1.7.0
Installing rubyntlm 0.6.3
Fetching webrobots 0.1.2
Installing webrick 1.7.0
Fetching method_source 1.0.0
Installing webrobots 0.1.2
Fetching mustache 1.1.1
Installing mustache 1.1.1
Fetching parallel 1.22.1
Installing parallel 1.22.1
Fetching plist 3.6.0
Installing method_source 1.0.0
Installing plist 3.6.0
Fetching rack 3.0.4.1
Fetching rainbow 3.1.1
Installing rainbow 3.1.1
Fetching rdiscount 2.2.7
Installing rack 3.0.4.1
Fetching rexml 3.2.5
Installing rdiscount 2.2.7 with native extensions
Installing rexml 3.2.5
Fetching rspec-support 3.12.0
Installing rspec-support 3.12.0
Fetching sorbet-runtime 0.5.10461
Installing sorbet-runtime 0.5.10461
Fetching ruby-progressbar 1.11.0
Installing ruby-progressbar 1.11.0
Fetching unicode-display_width 2.4.2
Installing unicode-display_width 2.4.2
Fetching ruby-macho 3.0.0
Installing ruby-macho 3.0.0
Fetching simplecov-html 0.12.3
Installing simplecov-html 0.12.3
Fetching simplecov_json_formatter 0.1.4
Installing simplecov_json_formatter 0.1.4
Fetching warning 1.3.0
Installing warning 1.3.0
Fetching addressable 2.8.1
Installing addressable 2.8.1
Fetching i18n 1.12.0
Installing i18n 1.12.0
Fetching tzinfo 2.0.5
Installing tzinfo 2.0.5
Fetching parser 3.2.0.0
Installing parser 3.2.0.0
Fetching elftools 1.2.0
Installing elftools 1.2.0
Fetching net-http-persistent 4.0.1
Installing net-http-persistent 4.0.1
Fetching ecma-re-validator 0.4.0
Installing ecma-re-validator 0.4.0
Fetching bootsnap 1.15.0
Installing bootsnap 1.15.0 with native extensions
Fetching unf 0.1.4
Fetching mime-types 3.4.1
Installing unf 0.1.4
Fetching parallel_tests 3.13.0
Installing mime-types 3.4.1
Fetching rspec-core 3.12.0
Installing parallel_tests 3.13.0
Fetching rspec-expectations 3.12.2
Installing rspec-core 3.12.0
Fetching rspec-mocks 3.12.3
Installing rspec-expectations 3.12.2
Fetching rspec-sorbet 1.9.1
Installing rspec-mocks 3.12.3
Fetching simplecov 0.22.0
Installing rspec-sorbet 1.9.1
Fetching activesupport 6.1.7.1
Installing activesupport 6.1.7.1
Fetching rubocop-ast 1.24.1
Installing simplecov 0.22.0
Fetching patchelf 1.4.0
Installing patchelf 1.4.0
Installing rubocop-ast 1.24.1
Fetching json_schemer 0.2.24
Fetching nokogiri 1.13.10 (arm64-darwin)
Installing json_schemer 0.2.24
Fetching domain_name 0.5.20190701
Fetching rspec-github 2.4.0
Fetching rspec-retry 0.6.2
Installing rspec-github 2.4.0
Installing rspec-retry 0.6.2
Fetching rspec_junit_formatter 0.6.0
Fetching rspec-its 1.3.0
Installing domain_name 0.5.20190701
Fetching rspec 3.12.0
Installing rspec-its 1.3.0
Installing rspec_junit_formatter 0.6.0
Fetching simplecov-cobertura 2.1.0
Fetching rubocop 1.43.0
Installing rspec 3.12.0
Fetching ronn 0.7.3
Installing simplecov-cobertura 2.1.0
Fetching http-cookie 1.0.5
Installing ronn 0.7.3
Fetching rspec-wait 0.0.9
Installing http-cookie 1.0.5
Installing rspec-wait 0.0.9
Installing rubocop 1.43.0
Installing nokogiri 1.13.10 (arm64-darwin)
Fetching mechanize 2.8.5
Fetching rubocop-rails 2.17.4
Fetching rubocop-capybara 2.17.0
Fetching rubocop-performance 1.15.2
Installing rubocop-capybara 2.17.0
Installing rubocop-performance 1.15.2
Installing mechanize 2.8.5
Fetching rubocop-sorbet 0.6.11
Fetching rubocop-rspec 2.18.0
Installing rubocop-rails 2.17.4
Installing rubocop-sorbet 0.6.11
Installing rubocop-rspec 2.18.0
Bundle complete! 36 Gemfile dependencies, 79 gems now installed.
Bundled gems are installed into `../../opt/homebrew/Library/Homebrew/vendor/bundle`
==> Testing macaulay2/tap/gfan
==> /opt/homebrew/Cellar/gfan/0.6.2_10/bin/gfan _version
Last 15 lines from /Users/muberraallahverdi/Library/Logs/Homebrew/gfan/test.01.gfan:
2023-02-02 10:59:42 +0300

/opt/homebrew/Cellar/gfan/0.6.2_10/bin/gfan
_version

dyld[43279]: Symbol not found: __ZNKSt5ctypeIcE13_M_widen_initEv
  Referenced from: <3324D32D-5491-3F6F-95BE-3090961B69F8> /opt/homebrew/Cellar/gfan/0.6.2_10/bin/gfan
  Expected in:     <8B3C73C0-EC8C-3419-B752-789544DC2E4E> /usr/lib/libstdc++.6.dylib
Error: macaulay2/tap/gfan: failed
An exception occurred within a child process:
  BuildError: Failed executing: /opt/homebrew/Cellar/gfan/0.6.2_10/bin/gfan _version
/opt/homebrew/Library/Homebrew/formula.rb:2526:in `block in system'
/opt/homebrew/Library/Homebrew/formula.rb:2462:in `open'
/opt/homebrew/Library/Homebrew/formula.rb:2462:in `system'
/opt/homebrew/Library/Taps/macaulay2/homebrew-tap/Formula/gfan.rb:46:in `block in <class:Gfan>'
/opt/homebrew/Library/Homebrew/formula.rb:2301:in `block (3 levels) in run_test'
/opt/homebrew/Library/Homebrew/utils.rb:605:in `with_env'
/opt/homebrew/Library/Homebrew/formula.rb:2300:in `block (2 levels) in run_test'
/opt/homebrew/Library/Homebrew/formula.rb:968:in `with_logging'
/opt/homebrew/Library/Homebrew/formula.rb:2299:in `block in run_test'
/opt/homebrew/Library/Homebrew/mktemp.rb:77:in `block in run'
/opt/homebrew/Library/Homebrew/mktemp.rb:77:in `chdir'
/opt/homebrew/Library/Homebrew/mktemp.rb:77:in `run'
/opt/homebrew/Library/Homebrew/formula.rb:2577:in `mktemp'
/opt/homebrew/Library/Homebrew/formula.rb:2293:in `run_test'
/opt/homebrew/Library/Homebrew/test.rb:45:in `block in <main>'
/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/timeout.rb:93:in `block in timeout'
/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/timeout.rb:33:in `block in catch'
/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/timeout.rb:33:in `catch'
/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/timeout.rb:33:in `catch'
/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/timeout.rb:108:in `timeout'
/opt/homebrew/Library/Homebrew/test.rb:50:in `<main>'

mahrud commented 1 year ago

Thanks! Try rebuilding gfan from source:

brew remove gfan --ignore-dependencies
brew install gfan --build-bottle
brew install M2

ps: it helps to wrap your code output like this:

code

artusakdamar commented 1 year ago

@mahrud Sorry for the late reply; I couldn't look at it for a while. I tried what you wrote but its giving me the same error.


(base) muberraallahverdi@192 ~ % brew remove gfan --ignore-dependencies
Uninstalling /opt/homebrew/Cellar/gfan/0.6.2_10... (60 files, 3.5MB)
(base) muberraallahverdi@192 ~ % brew install gfan --build-bottle
==> Fetching macaulay2/tap/gfan
==> Downloading https://raw.githubusercontent.com/Macaulay2/M2/d51564127d757a313
Already downloaded: /Users/muberraallahverdi/Library/Caches/Homebrew/downloads/ba9c765be65b3dfeb0c3c21b9cf0dc48e0e53d1a16809d17456758b422c02dda--patch-0.6.2
==> Downloading https://users-math.au.dk/~jensen/software/gfan/gfan0.6.2.tar.gz
Already downloaded: /Users/muberraallahverdi/Library/Caches/Homebrew/downloads/20d4b878fdf68f8f70ebd35b20b4551a8c7eb1f3e833c15473611ac2464a40af--gfan0.6.2.tar.gz
==> Installing gfan from macaulay2/tap
==> Patching
==> Applying patch-0.6.2
patching file Makefile
patching file 'src/application.cpp'
patching file 'src/enumeration.cpp'
patching file 'src/enumeration.h'
patching file 'src/field.h'
patching file 'src/field_rationalfunctions2.cpp'
patching file 'src/gmpallocator.cpp'
patching file 'src/lp.cpp'
patching file 'src/nbody.cpp'
patching file 'src/packedmonomial.cpp'
patching file 'src/packedmonomial.h'
patching file 'src/parser.cpp'
patching file 'src/polyhedralfan.cpp'
patching file 'src/polymakefile.cpp'
patching file 'src/polynomialgcd.cpp'
patching file 'src/vektor.cpp'
patching file 'src/timer.cpp'
patching file 'src/field_rationals.cpp'
==> make cddnoprefix=yes GMP_LINKOPTIONS=-L/opt/homebrew/opt/gmp/lib -lgmp GMP_I
==> make PREFIX=/opt/homebrew/Cellar/gfan/0.6.2_10 install
==> Not running 'post_install' as we're building a bottle
You can run it manually using:
  brew postinstall macaulay2/tap/gfan
🍺  /opt/homebrew/Cellar/gfan/0.6.2_10: 60 files, 3.5MB, built in 23 seconds
==> Running `brew cleanup gfan`...
Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
(base) muberraallahverdi@192 ~ % brew install M2
==> Fetching macaulay2/tap/macaulay2
==> Downloading https://github.com/Macaulay2/M2/archive/refs/tags/release-1.21.t
Already downloaded: /Users/muberraallahverdi/Library/Caches/Homebrew/downloads/b03ad43a23f645eabed8b116df2ac468d83d4aaa15520e71a73159c95c0c5156--M2-release-1.21.tar.gz
==> Installing macaulay2 from macaulay2/tap
==> Patching
==> git clone https://github.com/Macaulay2/M2-emacs.git M2/Macaulay2/editors/ema
==> git clone https://github.com/Macaulay2/memtailor.git M2/submodules/memtailor
==> git clone https://github.com/Macaulay2/mathic.git M2/submodules/mathic
==> git clone https://github.com/Macaulay2/mathicgb.git M2/submodules/mathicgb
==> cmake -GNinja -SM2 -BM2/BUILD/build-brew -DBUILD_NATIVE=OFF -DCMAKE_PREFIX_P
==> cmake --build M2/BUILD/build-brew --target M2-core M2-emacs M2-highlightjs
==> cmake --build M2/BUILD/build-brew --target install-Macaulay2Doc
==> cmake --build M2/BUILD/build-brew --target install-packages
Last 15 lines from /Users/muberraallahverdi/Library/Logs/Homebrew/macaulay2/08.cmake:
 -- making example results for "Poset"                                       -- 0.633325 seconds elapsed
 -- making example results for "compare"                                     -- 0.635307 seconds elapsed
 -- making example results for "posetMeet"                                   -- 0.634732 seconds elapsed
 -- making example results for "intersectionLattice"                         -- 0.64859 seconds elapsed
 -- making example results for "flagfPolynomial"                             -- 0.639726 seconds elapsed
 -- making example results for "isConnected(Poset)"                          -- 0.642812 seconds elapsed
 -- making example results for "connectedComponents(Poset)"                  -- 0.644608 seconds elapsed
 -- making example results for "isAtomic"                                    -- 0.638495 seconds elapsed
 -- making example results for "flagPoset"                                   -- 0.64437 seconds elapsed
 -- making example results for "diamondProduct"                              -- 0.638231 seconds elapsed
 -- making example results for "youngSubposet"                               -- 0.638786 seconds elapsed
 -- warning: found 127 documentation node(s) not listed as a subnode
 -- warning: missing node: vertexSet(Poset) cited by Poset
 -- warning: 1 warning(s) occurred in documentation for package Posets
ninja: build stopped: subcommand failed.

If reporting this issue please do so at (not Homebrew/brew or Homebrew/core):
  https://github.com/macaulay2/homebrew-tap/issues

These open issues may also help:
The Homebrew tap Macaulay2/tap/fflas-ffpack prevents Sage from building https://github.com/Macaulay2/homebrew-tap/issues/68

mahrud commented 1 year ago

I think I know what is causing this now. Just to be sure, could you first try this again?

brew test gfan

and if that succeeds, then try this:

brew remove normaliz
brew install --build-bottle normaliz
brew install --build-bottle M2

artusakdamar commented 1 year ago

@mahrud I tried it but i doesn't seem to work.

(base) muberraallahverdi@192 ~ % brew test gfan
Fetching gem metadata from https://rubygems.org/.......
Using minitest 5.17.0
Using public_suffix 5.0.1
Using bindata 2.4.14
Using msgpack 1.6.0
Using bundler 2.3.26
Using byebug 11.1.3
Using zeitwerk 2.6.6
Fetching concurrent-ruby 1.2.0
Using connection_pool 2.3.0
Using diff-lcs 1.5.0
Using ast 2.4.2
Using docile 1.4.0
Using unf_ext 0.0.8.2
Using did_you_mean 1.6.3
Using hana 1.3.7
Fetching regexp_parser 2.6.2
Using hpricot 0.8.6
Using json 2.6.3
Using mime-types-data 3.2022.0105
Using uri_template 0.7.0
Using net-http-digest_auth 1.4.1
Using racc 1.6.2
Using rubyntlm 0.6.3
Using webrobots 0.1.2
Using method_source 1.0.0
Fetching webrick 1.8.1
Using mustache 1.1.1
Using parallel 1.22.1
Using plist 3.6.0
Using rack 3.0.4.1
Using rainbow 3.1.1
Using rdiscount 2.2.7
Using rexml 3.2.5
Using rspec-support 3.12.0
Using sorbet-runtime 0.5.10461
Using ruby-progressbar 1.11.0
Using unicode-display_width 2.4.2
Using ruby-macho 3.0.0
Using simplecov-html 0.12.3
Using simplecov_json_formatter 0.1.4
Using warning 1.3.0
Using addressable 2.8.1
Fetching bootsnap 1.16.0
Installing webrick 1.8.1
Installing regexp_parser 2.6.2
Using elftools 1.2.0
Using net-http-persistent 4.0.1
Using parser 3.2.0.0
Using unf 0.1.4
Using mime-types 3.4.1
Using nokogiri 1.13.10 (arm64-darwin)
Using parallel_tests 3.13.0
Using ronn 0.7.3
Fetching rspec-core 3.12.1
Using rspec-expectations 3.12.2
Using rspec-mocks 3.12.3
Using rspec-sorbet 1.9.1
Using simplecov 0.22.0
Using patchelf 1.4.0
Using rubocop-ast 1.24.1
Using domain_name 0.5.20190701
Using ecma-re-validator 0.4.0
Using simplecov-cobertura 2.1.0
Fetching rubocop 1.44.1
Installing rspec-core 3.12.1
Using http-cookie 1.0.5
Using json_schemer 0.2.24
Using rspec 3.12.0
Using rspec-github 2.4.0
Using rspec-its 1.3.0
Using rspec-retry 0.6.2
Using rspec_junit_formatter 0.6.0
Using mechanize 2.8.5
Installing rubocop 1.44.1
Installing bootsnap 1.16.0 with native extensions
Using rubocop-capybara 2.17.0
Using rubocop-performance 1.15.2
Using rubocop-sorbet 0.6.11
Fetching rubocop-rspec 2.18.1
Installing concurrent-ruby 1.2.0
Using i18n 1.12.0
Fetching tzinfo 2.0.6
Installing rubocop-rspec 2.18.1
Installing tzinfo 2.0.6
Fetching activesupport 6.1.7.2
Installing activesupport 6.1.7.2
Using rubocop-rails 2.17.4
Bundle complete! 35 Gemfile dependencies, 78 gems now installed.
Bundled gems are installed into `../../opt/homebrew/Library/Homebrew/vendor/bundle`
Removing webrick (1.7.0)
Removing rubocop (1.43.0)
Removing rspec-wait (0.0.9)
Removing bootsnap (1.15.0)
Removing regexp_parser (2.6.1)
Removing tzinfo (2.0.5)
Removing rspec-core (3.12.0)
Removing concurrent-ruby (1.1.10)
Removing rubocop-rspec (2.18.0)
Removing activesupport (6.1.7.1)
==> Testing macaulay2/tap/gfan
==> /opt/homebrew/Cellar/gfan/0.6.2_10/bin/gfan _version
==> /opt/homebrew/Cellar/gfan/0.6.2_10/bin/gfan _overintegers --groebnerFan
==> /opt/homebrew/Cellar/gfan/0.6.2_10/bin/gfan _tropicalfunction
==> /opt/homebrew/Cellar/gfan/0.6.2_10/bin/gfan _secondaryfan
(base) muberraallahverdi@192 ~ % brew remove normaliz
Uninstalling /opt/homebrew/Cellar/normaliz/3.10.0... (31 files, 12.0MB)
normaliz 3.9.4 is still installed.
To remove all versions, run:
  brew uninstall --force normaliz
(base) muberraallahverdi@192 ~ % brew install --build-bottle normaliz
==> Fetching macaulay2/tap/normaliz
==> Downloading https://github.com/Normaliz/Normaliz/releases/download/3.10.0/no
Already downloaded: /Users/muberraallahverdi/Library/Caches/Homebrew/downloads/75dc5160823d9005185586c8745734e91e765ab0ce33a6d75c04cff869c3022c--normaliz-3.10.0.tar.gz
==> Installing normaliz from macaulay2/tap
==> autoreconf -vif
==> ./configure --prefix=/opt/homebrew/Cellar/normaliz/3.10.0 --disable-shared
==> make install
==> Not running 'post_install' as we're building a bottle
You can run it manually using:
  brew postinstall macaulay2/tap/normaliz
🍺  /opt/homebrew/Cellar/normaliz/3.10.0: 31 files, 12.0MB, built in 28 seconds
==> Running `brew cleanup normaliz`...
Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
Removing: /opt/homebrew/Cellar/normaliz/3.9.4... (30 files, 10.9MB)
Removing: /Users/muberraallahverdi/Library/Caches/Homebrew/normaliz--3.9.4.arm64_monterey.bottle.tar.gz... (3.4MB)
(base) muberraallahverdi@192 ~ % brew install --build-bottle M2
==> Fetching macaulay2/tap/macaulay2
==> Downloading https://github.com/Macaulay2/M2/archive/refs/tags/release-1.21.t
Already downloaded: /Users/muberraallahverdi/Library/Caches/Homebrew/downloads/b03ad43a23f645eabed8b116df2ac468d83d4aaa15520e71a73159c95c0c5156--M2-release-1.21.tar.gz
==> Installing macaulay2 from macaulay2/tap
==> Patching
==> git clone https://github.com/Macaulay2/M2-emacs.git M2/Macaulay2/editors/ema
==> git clone https://github.com/Macaulay2/memtailor.git M2/submodules/memtailor
==> git clone https://github.com/Macaulay2/mathic.git M2/submodules/mathic
==> git clone https://github.com/Macaulay2/mathicgb.git M2/submodules/mathicgb
==> cmake -GNinja -SM2 -BM2/BUILD/build-brew -DBUILD_NATIVE=OFF -DCMAKE_PREFIX_P
==> cmake --build M2/BUILD/build-brew --target M2-core M2-emacs M2-highlightjs
==> cmake --build M2/BUILD/build-brew --target install-Macaulay2Doc
==> cmake --build M2/BUILD/build-brew --target install-packages
Last 15 lines from /Users/muberraallahverdi/Library/Logs/Homebrew/macaulay2/08.cmake:
 -- making example results for "Poset"                                       -- 0.646256 seconds elapsed
 -- making example results for "compare"                                     -- 0.651214 seconds elapsed
 -- making example results for "posetMeet"                                   -- 0.642869 seconds elapsed
 -- making example results for "intersectionLattice"                         -- 0.6578 seconds elapsed
 -- making example results for "flagfPolynomial"                             -- 0.648087 seconds elapsed
 -- making example results for "isConnected(Poset)"                          -- 0.65115 seconds elapsed
 -- making example results for "connectedComponents(Poset)"                  -- 0.654234 seconds elapsed
 -- making example results for "isAtomic"                                    -- 0.653444 seconds elapsed
 -- making example results for "flagPoset"                                   -- 0.655266 seconds elapsed
 -- making example results for "diamondProduct"                              -- 0.642343 seconds elapsed
 -- making example results for "youngSubposet"                               -- 0.646886 seconds elapsed
 -- warning: found 127 documentation node(s) not listed as a subnode
 -- warning: missing node: vertexSet(Poset) cited by Poset
 -- warning: 1 warning(s) occurred in documentation for package Posets
ninja: build stopped: subcommand failed.

If reporting this issue please do so at (not Homebrew/brew or Homebrew/core):
  https://github.com/macaulay2/homebrew-tap/issues

These open issues may also help:
macaulay2: revision bump https://github.com/Macaulay2/homebrew-tap/pull/173
The Homebrew tap Macaulay2/tap/fflas-ffpack prevents Sage from building https://github.com/Macaulay2/homebrew-tap/issues/68

mahrud commented 1 year ago

Something is off: when I do the same I see:

==> Installing macaulay2 from macaulay2/tap
==> Patching
==> Applying c4bf16f3278118ff1b6fdf20d4ad68441f4b26c5.patch
patching file M2/Macaulay2/packages/Normaliz.m2

But your output is missing that line. Could you try:

brew cleanup
brew update

and then try this again?

brew install --build-bottle M2

artusakdamar commented 1 year ago

@mahrud Thank you so much, this fixed my problem. :)

mahrud commented 1 year ago

Glad that worked! To help others on M1 be able to install Macaulay2 without having to build it, could you upload the bottles you built? You only need to run the following commands which shouldn't take more than a few seconds, and then upload the bottles created in the same directory:

brew bottle --no-rebuild gfan
brew bottle --no-rebuild normaliz
brew bottle --no-rebuild M2

artusakdamar commented 1 year ago

@mahrud Ok, I ran those commands.

(base) muberraallahverdi@192 ~ % brew bottle --no-rebuild gfan
==> Bottling gfan--0.6.2_10.arm64_ventura.bottle.tar.gz...
./gfan--0.6.2_10.arm64_ventura.bottle.tar.gz
  bottle do
    sha256 cellar: :any, arm64_ventura: "15d153c34583bf3b10b86852fd4bac16e9d8fc12e524045a511472ec44350236"
  end
(base) muberraallahverdi@192 ~ % brew bottle --no-rebuild normaliz
==> Bottling normaliz--3.10.0.arm64_ventura.bottle.tar.gz...
==> Detecting if normaliz--3.10.0.arm64_ventura.bottle.tar.gz is relocatable...
./normaliz--3.10.0.arm64_ventura.bottle.tar.gz
  bottle do
    sha256 cellar: :any, arm64_ventura: "4d6264358ecc2d43fa43ae32f57268fd3ae7391223e27f36c009a8664e8c3911"
  end
(base) muberraallahverdi@192 ~ % brew bottle --no-rebuild M2
==> Bottling macaulay2--1.21_1.arm64_ventura.bottle.tar.gz...
==> Detecting if macaulay2--1.21_1.arm64_ventura.bottle.tar.gz is relocatable...
./macaulay2--1.21_1.arm64_ventura.bottle.tar.gz
  bottle do
    sha256 cellar: :any, arm64_ventura: "7ebb26b96ff6f5e7640449c1d1483e0edfa05c55706adfcf4278db71927818fc"
  end

mahrud commented 1 year ago

Thank you! Could you upload the files here or somewhere convenient for you?

./gfan--0.6.2_10.arm64_ventura.bottle.tar.gz
./normaliz--3.10.0.arm64_ventura.bottle.tar.gz
./macaulay2--1.21_1.arm64_ventura.bottle.tar.gz

artusakdamar commented 1 year ago

@mahrud Alright, I've uploaded two of them. But the file starting with macaulay2--1.... is not uploading due to its size.

gfan--0.6.2_10.arm64_ventura.bottle.tar.gz normaliz--3.10.0.arm64_ventura.bottle.tar.gz

mahrud commented 1 year ago

Thanks! Any chance you could share it via dropbox or another file sharing service?

artusakdamar commented 1 year ago

@mahrud I would love to share it, but I'm not sure how. I use google drive and as far as I know, I can only share a file with specific contacts. I could send an email to you if you like.

artusakdamar commented 1 year ago

@mahrud I tried sending it by email, but I'm having issues because of its size.

Macaulay2 / homebrew-tap

Build issue on macOS 13.1 using M1 system #171