Machine-Learning-for-Medical-Language cnlp_transformers issues

Machine-Learning-for-Medical-Language / cnlp_transformers

Transformers for Clinical NLP

https://cnlp-transformers.readthedocs.io/en/stable/

Apache License 2.0

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update hf transformers version for safetensors saving

#205 tmills opened 1 week ago
0
[FIX] Updated `structure_labels` function to output softmax probability instead of logit for the best category

#204 wonjininfo closed 1 month ago
1
[FEAT] Add feature to export sentences. Modified output format

#203 wonjininfo closed 6 days ago
0
Dev v0.7.0

#202 tmills opened 2 months ago
0
Pytorch version requirements in setup.cfg

#201 wonjininfo opened 2 months ago
1
Experimental macOS/MPS support

#200 ianbulovic closed 2 months ago
1
first pass at MPS support

#199 ianbulovic closed 3 months ago
1
Newer HF transformers version saves model weights as model.safetensors instead of pytorch_model.bin

#198 guo0O0o opened 3 months ago
3
Deleted import line for ALL_PRETRAINED_CONFIG_ARCHIVE_MAP (deprecated)

#197 guo0O0o closed 3 months ago
1
Temporal extraction

#196 spencerthomas1722 opened 8 months ago
0
Deprecated logger.warn() to be removed in Python 3.13

#195 angus-lherrou opened 11 months ago
0
REST APIs Support Loading Models on Disk

#194 etgld opened 11 months ago
1
[FUNC] Add an option for truncation from left

#193 wonjininfo closed 8 months ago
2
docker: tweak docker builds, mostly to get gpus working

#192 mikix closed 1 year ago
0
Add docker build script & update the termexists model

#191 mikix closed 1 year ago
0
Make sure eval_one_score metric is saved for Trainer

#190 mikix closed 8 months ago
3
Examples for Probability Outputs and Error Analysis

#189 etgld opened 1 year ago
0
Getting train, eval, dev, working so long as file columns fully overlap with task names

#188 etgld opened 1 year ago
2
Update drugs.com dataset URL

#187 mikix closed 1 year ago
1
--do_eval with no --do_train crashes when checking for model selection labels

#186 etgld closed 1 year ago
2
Label Names and Supports In cnlp_metrics

#185 etgld opened 1 year ago
0
Add isort to pre-commit hooks

#184 angus-lherrou closed 1 year ago
2
Implement domain-adaptive pretraining

#183 angus-lherrou closed 1 year ago
1
dataset and metadata schema

#182 angus-lherrou opened 1 year ago
0
Cleanup of several functions, adding doc strings and type annotations.

#181 tmills closed 1 year ago
0
add tests for functions

#180 tmills opened 1 year ago
0
move argument handling code into cnlp_args

#179 tmills opened 1 year ago
0
Add pre-commit

#178 angus-lherrou closed 1 year ago
0
Clean up data format table, add description of hier model.

#177 tmills closed 1 year ago
0
Initial run of black formatter.

#176 tmills closed 1 year ago
0
Output prediction probs

#175 wonjininfo closed 1 year ago
0
Dev v0.6.1

#174 tmills closed 1 year ago
0
added arguments for model selection metric

#173 spencerthomas1722 closed 1 year ago
1
Dev error analysis

#172 etgld closed 10 months ago
2
More human readable predictions and error analysis with no prediction re-runs

#171 etgld opened 1 year ago
2
Keep existing classifiers (hier models)

#170 wonjininfo closed 1 year ago
0
For the hierarchical model, we can't load classifier weights from the saved model

#169 wonjininfo closed 1 year ago
0
extract chemprot requirements from main setup.cfg (PyPI disallows direct dependency links)

#168 angus-lherrou closed 1 year ago
0
Dev v0.6.0

#167 tmills closed 1 year ago
0
update CONTRIBUTING.md with docker build/test instructions

#166 tmills opened 1 year ago
0
add support for python 3.11

#165 tmills opened 1 year ago
1
save config.json in training; actually loads best model before prediction

#164 spencerthomas1722 closed 1 year ago
0
Added dev dockerfiles

#163 dogversioning closed 1 year ago
2
Grab chunk attentions so that we can visualize hierarchical attention.

#162 tmills closed 1 year ago
1
Drop support for Python 3.7

#161 angus-lherrou closed 1 year ago
0
Drop support for Python 3.7

#160 angus-lherrou closed 1 year ago
0
modify HierarchicalTransformer to pass back attention from hierarchical transformer layer

#159 tmills closed 1 year ago
0
implement more general rest API for cnlpt base model that uses config instead of hardcoding anything

#158 tmills opened 1 year ago
0
Implement dev version of Dockerfiles

#157 tmills opened 1 year ago
0
writing predictions uses last model rather than best model

#156 tmills closed 1 year ago
0