Some changes in negation - Githubissues

Machine-Learning-for-Medical-Language / source-free-domain-adaptation

Scripts to manipulate data sources for the upcoming shared task on clinical negation detection and time expression parsing

Apache License 2.0

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Some changes in negation #3

Closed EgoLaparra closed 4 years ago

EgoLaparra commented 4 years ago

The command to run the baseline didn't work in my case because the device was set to cuda. It also complained about a missing logging_dir argument. I've reordered the code a bit so now it's more similar to the time baseline.
The version of gold.tsv in the repository was not giving me the correct results. I've replaced it with dev_labels:

gold.tsv
negation_f1:0.19753086419753088
negation_precision:0.20149253731343283
negation_recall:0.1937219730941704

dev_labels.txt
negation_f1:0.8340192043895748
negation_precision:0.8507462686567164
negation_recall:0.8179372197309417

I've removed test.tsv since it makes the scorer fail:

Incorrect files:
--- expected
+++ uploaded
@@ -100 +99,0 @@
-negation/test.tsv

I've made some changes in getting_started_negation.html to reflect the changes.