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MachineLearningLifeScience / poli

A library of discrete objectives
MIT License
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Implement set of DMS experiment results as static optimization problems #255

Open RMichae1 opened 1 month ago

RMichae1 commented 1 month ago
  1. GB1 Problem -- see: https://www.sciencedirect.com/science/article/pii/S2405471223002107?via%3Dihub
  2. TrpB Problem -- combinatorially complete on active site

As discussed 12-09-2024 JC BioML

miguelgondu commented 1 month ago

One idea: we could save large assets in poli-assets.

miguelgondu commented 1 month ago

@RMichae1, do you want to take the lead on this one?

RMichae1 commented 3 weeks ago

It looks like the fitness.csv target assets from the ALDE, and source papers are sufficiently small (few MB), to be added as files directly.

The GitHub LFS solution seems overkill for this particular problem.

Should we still implement the solution with LFS in mind @miguelgondu ?

miguelgondu commented 3 weeks ago

I'm down to have them as assets directly. We can optimize later on when we find the need.