What steps will reproduce the problem?
Try to open a SAM file with universal new line mode ("rU"), for example opening
a Unix SAM file on Windows or the other way around.
What is the expected output?
Opens the SAM file.
What do you see instead?
Traceback (most recent call last):
...
File "csamtools.pyx", line 459, in csamtools.Samfile.__cinit__ (pysam/csamtools.c:4992)
File "csamtools.pyx", line 504, in csamtools.Samfile._open (pysam/csamtools.c:5669)
AssertionError: invalid file opening mode `rU`
What version of the product are you using? On what operating system?
pysam 0.5, Mac OS X Snow Leopard.
Please provide any additional information below.
http://docs.python.org/library/functions.html#open
Original issue reported on code.google.com by p.j.a.c...@googlemail.com on 13 Oct 2011 at 3:04
Original issue reported on code.google.com by
p.j.a.c...@googlemail.com
on 13 Oct 2011 at 3:04