Closed GoogleCodeExporter closed 8 years ago
Hi,
thank for you for the suggestion. The new names have been added.
Best wishes,
Andreas
Original comment by andreas....@gmail.com
on 19 Oct 2011 at 7:58
I see the RNEXT, PNEXT and TLEN change now,
http://code.google.com/p/pysam/source/diff?spec=svn66843f1a79fbd50cd9e206efb3ef0
5a53cd0ec7c&old=6480d5c5976c5df576c99c9fb6d97b54c352665a&r=66843f1a79fbd50cd9e20
6efb3ef05a53cd0ec7c&format=unidiff&path=%2Fpysam%2Fcsamtools.pyx
What about is_read1, is_read2 being switched to is_first_read and is_last_read
or similar?
Original comment by p.j.a.c...@googlemail.com
on 21 Oct 2011 at 11:13
On second thoughts, maybe to match pysam.PileupRead use is_head and is_tail
(assuming the meaning is close enough).
Also FLAG bit properties is_paired and is_proper_pair would need renaming,
perhaps is_multi_segs and is_proper_segs or similar?
Original comment by p.j.a.c...@googlemail.com
on 22 Oct 2011 at 12:24
Original issue reported on code.google.com by
p.j.a.c...@googlemail.com
on 14 Oct 2011 at 1:36