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MadsAlbertsen / mmgenome

Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
https://kasperskytte.github.io/mmgenome2/
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Extracting 16S rRNA sequences #26

Closed vrbrand closed 7 years ago

vrbrand commented 8 years ago

Hi,

I'm fairly new to this and was wondering where I could access the gg_90.fasta file used to extract 16S rRNA sequences in the rRNA.sh script. Is this a reference to the Greengenes database (ie: latest version is gg_13_5) or is it something else entirely?

Thanks so much!

Kirk3gaard commented 7 years ago

Hi vrbrand

You can grab it here: https://dl.dropboxusercontent.com/u/2964658/gg_90.fasta

Yes it is just the GreenGenes database clustered at 90 % sequence identity

vrbrand commented 7 years ago

Thanks!