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Magdoll / SQANTI2

SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
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will SQANTI2 works on custom fasta file? #31

Closed LuyiTian closed 5 years ago

LuyiTian commented 5 years ago

My fasta file is not the ouput from pacbio (from nanopore instead). and I got the error as such:

Invalid input IDs! Expected PB.X.Y or PB.X.Y|xxxxx or PBfusion.X format but saw ENSG00000197956.9_153534599_153535991_1 instead. Abort!

is it possibly to use custom fasta file as input for SQANTI2?

Magdoll commented 5 years ago

Hi @LuyiTian ,

We require SQANTI2 input to have a particular sequence ID format. If you'd like to use other kinds of input data, you would have to alter the sequence IDs.

Thanks, --Liz

caocaoBioInfo commented 4 years ago

Hi @LuyiTian ,

We require SQANTI2 input to have a particular sequence ID format. If you'd like to use other kinds of input data, you would have to alter the sequence IDs.

Thanks, --Liz

how can we do that ?such as scipt or something? Thanks

Magdoll commented 4 years ago

Hi please move to using SQANTI3. SQANTI2 is deprecated. -Liz