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Magdoll / SQANTI2

SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
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More specific instructions installing cDNA_cupcake #41

Closed astrophys closed 5 years ago

astrophys commented 5 years ago

FYI, it appears that recently, cDNA_Cupcake created a python 2.7 branch. The most recent master only supports python 3.7. In your installation instructions, perhaps suggest after cloning the repo changing to the 2.7 branch?

E.g. 

cd cDNA_Cupcake
git checkout origin/Py2_v8.7.x
python setup.py build
 pip install --prefix=/some/path/cDNA_Cupcake/ --ignore-installed .

Best, Ali

Magdoll commented 5 years ago

Hi @astrophys ,

Yes, thanks for the reminder. Sorry currently there are two versions - I'm hoping to fully switch to Py3.7 in a bit. For now, Py2.7 is kept as legacy. I have updated the wiki instructions. -Liz