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Maggi-Chen / FusionSeeker

A gene fusion caller for long-read transcriptome sequencing data.
MIT License
14 stars 4 forks source link

Breakpoint strand information #6

Open soymintc opened 1 year ago

soymintc commented 1 year ago

Hi!

I was wondering if you could enhance the outputs by adding the strand of the gene and the strand of the fusion. Would be a great help. In the meanwhile I'm left to pulling the reads from the breakpoints of the bam file and figuring out the strand of the fusion by extracting the alignment flag. But asking here because I'm sure it would be best if FusionSeeker could implement this.

Best, Seongmin

Mark-wt commented 4 months ago

I think so. Hope this function will be added for comparing as other tools contain the strand information.