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Maggi-Chen / Inspector

A tool for evaluating long-read de novo assembly results
MIT License
21 stars 9 forks source link

Consistency in formatting of summary_statistics #11

Closed lcoombe closed 1 year ago

lcoombe commented 1 year ago

Hello,

I'm trying out Inspector, and noticed that there are some inconsistencies with the formatting of the file summary_statistics. For example, most header/value pairs are tab-separated, but not in all cases:

For example in this script writing to the summary_statistics file: https://github.com/Maggi-Chen/Inspector/blob/master/denovo_static.py lines 230-233 write a tab, but lines 451-452 do not.

Having consistent formatting of header\tvalue would be helpful for parsing the output file on the command-line.

Thanks for developing this tool! Lauren

Maggi-Chen commented 1 year ago

Hello Lauren,

Thank you for pointing this out! I think these few lines were missed last time I edited it. I have fixed this in the latest version. Thank you for using Inspector!

Thanks, Maggi

lcoombe commented 1 year ago

Great - thanks so much!