I wanted to use Inspector to inspect an assembly that's been scaffolded to chromosomes, but our chromosomes are greater than 512 Mb (i.e., the limit for samtools index to create a bai). Is it possible for the pipeline to use csi instead? Or is there a workaround, like using inspector --skip_read_alignment?
Hi,
I wanted to use Inspector to inspect an assembly that's been scaffolded to chromosomes, but our chromosomes are greater than 512 Mb (i.e., the limit for samtools index to create a bai). Is it possible for the pipeline to use csi instead? Or is there a workaround, like using inspector --skip_read_alignment?