dup-merged-*: No such file or directory

Maggi-Chen / Inspector

A tool for evaluating long-read de novo assembly results

MIT License

27 stars 9 forks source link

dup-merged-*: No such file or directory #30

Open Mo7ammedFarahat opened 2 months ago

Mo7ammedFarahat commented 2 months ago

Hi Im running the tool on 1 haplotype with a reference mode, using 240 GB and 32 Cores. I got this error.

[M::main] CMD: minimap2 -a -I 10G --eqx -x asm5 -t 4 --secondary=no /cbio/projects/031/mohammedfarahat/reference/GCF_000001405.26_GRCh38_genomic.fa _AB2563_hap1_ref_out/valid_contig.fa [M::main] Real time: 3018.615 sec; CPU: 7382.118 sec; Peak RSS: 17.721 GB [bam_sort_core] merging from 8 files and 4 in-memory blocks... cat: '_AB2563_hap1_ref_out/dup-merged-*': No such file or directory

yuweisong-uab commented 15 hours ago

Hi, Do you mind providing more information about the command you used. This should be a warning and not influence the final results

Best, Yuwei