Draft PR in order to use different number of profiles between contrast / repetition

[aTrotier]

linked to issue : #138

• First correction : correct encodingSize for acq to raw + ut

[codecov-commenter]

Codecov Report

Base: 63.05% // Head: 63.05% // No change to project coverage :thumbsup:

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[aTrotier]

@tknopp it was easier than I thought :)

Right now I only need one temporal dimension with dedicated trajectories. But If at some points if I want to implement XD-GRASP reconstruction for cardiac / respiratory, I will also need a second dimension.

Is that ok if I also implement the possibility to have various trajectory along either contrasts and repetitions ? Or do you prefer to let the repetition dimension as it is and later adding another dimension ? (like segment / phase / set if we want to stick to the MRD flags)

[tknopp]

Is that ok if I also implement the possibility to have various trajectory along either contrasts and repetitions ?

Yes sounds good. You can ping me once this is ready to merge.

[aTrotier]

As suggested by @JeffFessler, I have created an example with literate to show how to use that possibility. It works locally for me and gives this html pages : index.html.zip

Maybe @mrikasper also want to take a look for documentation enhancements

[aTrotier]

@tknopp maybe we can merge this PR.

I'll create another PR for the repetition later. It will require a lot of changes and maybe breaking ones.

[aTrotier]

The example is generated with Literate.jl but I don't see the plot. I also had that issue in local because I had to dev the packages. I think the package used in docs/ are not the one on main.

@JeffFessler Do you know how to show the error in the page build by literate ?

[JeffFessler]

I don't have any experience with using Literate when there are subpackages. Seems tricky! For a single-package repo, I first debug the Literate examples locally by running julia -- make.jl in the docs directory like here: https://github.com/JeffFessler/MIRT.jl/tree/main/docs When I think it works, I submit a PR and the CI runs the docs in the cloud and I can look at the action outputs to see if it runs. Especially the "BuildAndDeploy" tab for the Documentation build, such as this: https://github.com/JeffFessler/MIRT.jl/actions/runs/3644407653/jobs/6153624826 You can also use "push preview" to see if it builds properly but I don't use that too often: https://documenter.juliadocs.org/stable/man/hosting/#gh-pages-Branch