search

Malfoy / BGREAT

de Bruijn Graph REAd mapping Tool
14 stars 2 forks source link

Issues with Map.py #2

Closed tseemann closed 9 years ago

tseemann commented 9 years ago
  1. Name too general
  2. subprocess.call(['./BGREAT',k,readFile,unitigFile,'2','1']) but binary is called "bgreat" and you can assume it will be in the PATH when packaged
  3. subprocess.call(['./getBigUnitig',unitigFile,'big.fa',readsize]) but binary is called "getLargeUnitigs" and in PATH when packaged
Malfoy commented 9 years ago

Thank you for this remark ! I modified it. The python script is just here to be a workflow starting example.