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ManavalanG / ResCons

ResCons, a GUI software suite, assists in residue conservation analysis
https://manavalang.github.io/ResCons/
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Unable to generate results for a large dataset #2

Open Shubhangi1397 opened 2 years ago

Shubhangi1397 commented 2 years ago

Hello, I have MSA file of 93 thousand protein sequences. I wanted to generate mismatch excel sheet for my dataset but ResCon seems to crash for a large dataset. The error suggests there might be memory issue.
I am using ResCon on Windows. Many thanks Shubhangi

ManavalanG commented 2 years ago

Could you post the error message? Also, how much memory do you have available in your device?

Shubhangi1397 commented 2 years ago

Here is a screenshot of the error message. I have 32GB RAM.

On Thu, 12 May 2022 at 18:24, Manavalan Gajapathy @.***> wrote:

Could you post the error message? Also, how much memory do you have available in your device?

— Reply to this email directly, view it on GitHub https://github.com/ManavalanG/ResCons/issues/2#issuecomment-1125245083, or unsubscribe https://github.com/notifications/unsubscribe-auth/AYFGVFTENEA73GXQ6BH3O4TVJU5EDANCNFSM5VYGTEWQ . You are receiving this because you authored the thread.Message ID: @.***>

--

Shubhangi Kandwal

PhD Student in Biochemistry,

School of Biochemistry and Immunology,

Trinity Biomedical Sciences Institute (TBSI),

Trinity College Dublin, University of Dublin

email: @.***

ManavalanG commented 2 years ago

I don't see any image. Could you check on your end?

Shubhangi1397 commented 2 years ago

Here is the error message: Traceback (most recent call last): File "C:\Python2.7\llb\llb-tk\Tkinter.py", line 1536, incall File "ResCons_v1.py", line 3560, in run_script fetch_mismatch() File "ResCons_v1.py", line 1032, in fetch_mismatch dict_identifier_status[record.id].append('match') MemoryError

On Thu, 12 May 2022 at 22:21, Manavalan Gajapathy @.***> wrote:

I don't see any image. Could you check on your end?

— Reply to this email directly, view it on GitHub https://github.com/ManavalanG/ResCons/issues/2#issuecomment-1125433356, or unsubscribe https://github.com/notifications/unsubscribe-auth/AYFGVFQUZLKBRNFKLMVTCUDVJVY3VANCNFSM5VYGTEWQ . You are receiving this because you authored the thread.Message ID: @.***>

--

Shubhangi Kandwal

PhD Student in Biochemistry,

School of Biochemistry and Immunology,

Trinity Biomedical Sciences Institute (TBSI),

Trinity College Dublin, University of Dublin

email: @.***

ManavalanG commented 2 years ago

Do you use 32-bit or 64-bit build of Python? If you happen to be on 32-bit, switching to 64-bit would help.

Shubhangi1397 commented 2 years ago

Hey, I do have 64-bit build of Python. Python 3.10.4 (tags/v3.10.4:9d38120, Mar 23 2022, 23:13:41) [MSC v.1929 64 bit (AMD64)] on win32