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MangiolaLaboratory
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sccomp
Testing differences in cell type proportions from single-cell data.
https://stemangiola.github.io/sccomp/
GNU General Public License v3.0
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add parameter, tests and docs
#164
stemangiola
opened
1 day ago
0
Error: Fitting failed. Unable to retrieve the metadata
#163
pandaqiuqiu
opened
2 days ago
5
Fixes for hca
#162
stemangiola
opened
2 weeks ago
0
version UP
#161
stemangiola
closed
2 weeks ago
0
Convert counts to estimates framewotk
#160
stemangiola
opened
2 weeks ago
0
Build unit tests (For the functions currently used)
#159
stemangiola
opened
2 weeks ago
0
Fix boxplot with no significance
#158
stemangiola
closed
1 month ago
0
significant associations of output and boxplot?
#157
pandaqiuqiu
opened
1 month ago
3
merge master to change residuals branch
#156
stemangiola
closed
1 month ago
0
deprecate argument
#155
stemangiola
closed
1 month ago
0
Multiple covariates use case
#154
andrewdchen
closed
1 week ago
2
Cmdstanr nested grouping
#153
stemangiola
closed
2 months ago
0
Refactor model functions
#152
stemangiola
closed
2 months ago
0
Cmdstanr nested grouping
#151
stemangiola
closed
2 months ago
0
Refactor model functions
#150
stemangiola
closed
2 months ago
0
Parallelisation reduce
#149
stemangiola
closed
2 months ago
0
add message
#148
stemangiola
closed
3 months ago
0
Calculate proportion difference
#147
stemangiola
closed
3 months ago
0
Column named "count" silently used when running in proportions mode
#146
william-hutchison
opened
4 months ago
1
Factors with missing levels produce criptic error message
#145
william-hutchison
opened
4 months ago
0
rebase
#144
stemangiola
closed
4 months ago
0
rebase
#143
stemangiola
closed
5 months ago
0
drop environment from formula and quotes
#142
stemangiola
closed
5 months ago
0
update README and vignette
#141
stemangiola
closed
5 months ago
0
pass the attribute
#140
stemangiola
closed
5 months ago
0
update functions to be exposed
#139
stemangiola
closed
5 months ago
0
logit fold change is hard code in plot_xd_intervals()
#138
hansvancalster
closed
5 months ago
5
allow custom output samples for vb
#137
stemangiola
closed
5 months ago
0
Instantiate
#136
stemangiola
closed
5 months ago
0
Inconsistent results between seeds
#135
michaelplynch
closed
1 month ago
9
add check for factor consistency
#134
stemangiola
opened
6 months ago
0
Continuous variable as main effect
#133
jonathan-columbiau
closed
6 months ago
4
rebase
#132
stemangiola
closed
7 months ago
0
rebase
#131
stemangiola
closed
7 months ago
0
Multilevel model error
#130
jonathan-columbiau
closed
7 months ago
2
fif checks
#129
stemangiola
closed
7 months ago
0
rebase master
#128
stemangiola
closed
8 months ago
0
Variational default
#127
stemangiola
closed
8 months ago
0
Proportions
#126
stemangiola
closed
1 month ago
0
rebase
#125
stemangiola
closed
8 months ago
0
Change residuals
#124
stemangiola
closed
1 month ago
0
Interpretation when both bars are highlighted versus one
#123
LinearParadox
closed
5 months ago
14
question about lumping or selecting compositional data
#122
hansvancalster
closed
8 months ago
1
allow arbitrary contrasts to be plotted
#121
stemangiola
closed
8 months ago
0
When the sum of generated count is 0, the division was returning null…
#120
stemangiola
closed
8 months ago
0
.x does not exist here
#119
stemangiola
closed
8 months ago
0
update theme
#118
stemangiola
closed
8 months ago
0
sccomp plot method -> rstan::gqs throws warning
#117
hansvancalster
closed
8 months ago
3
custom ggplot theme misses theme element
#116
hansvancalster
closed
8 months ago
1
sccomp_boxplot() errors when passing a factor variable
#115
hansvancalster
closed
8 months ago
3
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