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MangiolaLaboratory / sccomp

Testing differences in cell type proportions from single-cell data.
https://stemangiola.github.io/sccomp/
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Formula for repeated measures? #65

Closed mdmanurung closed 1 year ago

mdmanurung commented 2 years ago

Hi Stefano,

Is it possible to use this package for repeated measures data?

Regards, Mikhael

stemangiola commented 2 years ago

Hello @mdmanurung , sorry for the delay.

If you mean multilevel models, currently not. Although it is becoming a necessity for my own analyses, so I am tempted to implement it, although it is not easy task.

stemangiola commented 2 years ago

Hello @mdmanurung , almost complete. Sccomp for complex designs.

mdmanurung commented 2 years ago

Awesome news! Looking forward to it @stemangiola

stemangiola commented 1 year ago

@mdmanurung please have a look to this branch (README shows how to do it)

https://github.com/stemangiola/sccomp/tree/separate-outlier-in-two-methods