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MannLabs / CKG

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
MIT License
415 stars 94 forks source link

Neo4j and graph problems #82

Open shiningspark opened 2 years ago

shiningspark commented 2 years ago

  1. I can see your own node information in the http://localhost:7474/browser/, but the secondary Desktop I can't see any node information, database is completely empty. 1647931636(1)

  2. At http://localhost:7474/browser/, after I start node, they will be very mess, I can't normal use, I want to know is what reason. 1647931778(1)

  3. When creating the project, the number used cannot be stored in the database normally. However, you can find the number created by the system in localhost:7474/browser/ and use this number to search for the project

shiningspark commented 2 years ago

@albsantosdel 希望你能帮我解答

albsantosdel commented 2 years ago

Hi,

  1. If I understand correctly, the graph is built correctly and the connection to the database works but when you access Neo4j desktop, you cannot see any nodes. The screenshot you sent shows that the database you are accessing is not pointing to the right port (:7474) and it points instead to :11005, which is a different database.

  2. It seems that the project upload worked and you have your project with all nodes and edges created. The visualization of the entire project graph in the Neo4j environment may be as you say messy, but generally you will want to use this interface to query specific nodes, relationships or paths and not the full network, or apply specific graph algorithms to extract information from the graph.

  3. I am not sure what the issue is. The project identifier is unique and if you try to create a project with the same identifier you will get an error.

shiningspark commented 2 years ago

Hello! Thanks for getting back to me! I've got a bigger problem! When I run Docker, everything looks ok (I can live with that). When I create a project, or normal, but when I upload design file and protein data problems (proteomics), I have uploaded the experimental designs and clinical design, but when I upload the protein data click on generate report, I don't get any feedback, page into the endless waiting, I am not sure whether the design document has been uploaded successfully (the page has indeed been loaded), but I cannot get the result of the report. Could you please help me answer the question?

The Docker log is shown in Figure 1 below, and the webpage is shown in Figure 2 below 593c3ad8c4c9783bf39ef652324eccb 990d5d45f5fa790b4346a9cab0f1f94