MannLabs / SPARCSpy

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Cellpose Segmentation generates incomplete masks #35

Open sophiamaedler opened 3 months ago

sophiamaedler commented 3 months ago

Sometimes cell pose generates incomplete masks like this:

Screenshot 2024-05-13 at 17 14 32

In the cell pose segmentation method we should implement a step to automatically remove these.

Maybe a criteria we could select for is that for a mask to be considered valid it can not have any holes?