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MannLabs
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alphabase
Infrastructure of AlphaX ecosystem
https://alphabase.readthedocs.io
Apache License 2.0
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ENH: hydroxyisobutyryl@K smiles
#223
boopthesnoot
closed
2 days ago
1
FIX Sage spec idx
#222
GeorgWa
opened
4 days ago
1
Append SpecLibFlat libraries
#221
GeorgWa
opened
4 days ago
1
Peptides SMILES representation
#220
boopthesnoot
closed
5 days ago
1
Updating smiles with changes from main
#219
boopthesnoot
closed
1 week ago
0
Development
#218
jalew188
closed
2 weeks ago
1
memory mapped dask arrays
#217
sophiamaedler
opened
1 month ago
0
#215 add FG.ApexIonMobility for SPN report reader
#216
jalew188
closed
2 weeks ago
3
Ion mobility column of spectronaut report not being read in by psm_reader
#215
mlorenz49
opened
1 month ago
1
GUI with servers crashed due to multiprocessing with torch and mono
#214
jalew188
opened
1 month ago
0
Development
#213
jalew188
closed
1 month ago
5
Multithreading does not work for isotope calculation
#212
machth
opened
2 months ago
2
Loading library from hdf to translate to tsv fails with KeyError
#211
JuliaS92
closed
2 months ago
3
add support for fixed string arrays
#210
sophiamaedler
opened
2 months ago
0
#208 comment protein-level decoy out, as no packages use it yet.
#209
jalew188
closed
1 month ago
1
Protein-level decoy is not consistant with `DecoyGenerator` class
#208
jalew188
closed
1 month ago
0
Making sure modifications.tsv is up to date
#207
boopthesnoot
closed
2 months ago
1
new sage reader
#206
GeorgWa
closed
2 months ago
2
187 tutorial basic settings
#205
jalew188
closed
2 months ago
1
update unimod to tsv
#203
GeorgWa
closed
2 months ago
1
Open hdf files in read mode if read-only is set
#202
mschwoer
closed
1 month ago
4
#198 a new param save_mod_seq_in_other_df=False in SpecLibBase.save_hdf
#201
jalew188
closed
2 months ago
1
smiles extra and decorator for rdkit functions
#200
GeorgWa
closed
2 months ago
2
dynamic generation of SMILES for PTMs
#199
boopthesnoot
closed
1 month ago
8
Save precursor_df into HDF5 as a single dataframe instead of two
#198
jalew188
closed
1 month ago
0
FEAT test data downloader
#197
GeorgWa
closed
2 months ago
0
load modseq by default
#196
GeorgWa
closed
2 months ago
1
Merge Development
#195
jalew188
closed
3 months ago
1
Merge Development
#194
jalew188
closed
3 months ago
1
#169 FIX modification sites in sage reader
#193
jalew188
closed
3 months ago
1
Patch the failing test. Note: this needs a more through solution!
#192
mschwoer
closed
3 months ago
2
Tutorial: Basic functionalities in alphabase
#190
jalew188
opened
3 months ago
0
windowsfix for np.int64
#189
machth
closed
3 months ago
2
Fix double modications
#188
mschwoer
closed
2 months ago
3
Tutorial: basic settings in alphabase
#187
jalew188
opened
3 months ago
1
test
#186
mschwoer
closed
2 months ago
1
Tutorial Outline Notebook
#184
jalew188
closed
3 months ago
0
Development 1.2.5
#183
jalew188
closed
3 months ago
0
Mitigate wrong encoding under windows
#182
GeorgWa
closed
3 months ago
2
Race condition when reading speclib from two instances
#180
mschwoer
opened
3 months ago
7
ERROR: 'charmap' codec can't decode byte 0x81 in position 4429...
#181
hcadre
closed
3 months ago
11
remove settings.ini from .bumpversion
#178
GeorgWa
closed
4 months ago
0
Release 1.2.4
#177
GeorgWa
closed
4 months ago
1
Remove import sides effects and wildcard importing
#176
jalew188
closed
4 months ago
0
More linting ii
#175
mschwoer
closed
2 months ago
1
auto-fix more linting issues
#174
mschwoer
closed
2 months ago
4
Use https://charlesreid1.github.io/python-patterns-the-registry.html for registers
#173
jalew188
opened
4 months ago
0
FIX noqa by using register_reader(), address many side effects
#172
jalew188
closed
4 months ago
1
Remove noqa
#171
jalew188
closed
4 months ago
1
revert back to run reduced set of tests on branches
#170
mschwoer
closed
4 months ago
0
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