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MannLabs / alphabase

Infrastructure of AlphaX ecosystem

https://alphabase.readthedocs.io

Apache License 2.0

31 stars 9 forks source link

Closed jalew188 closed 1 year ago

jalew188 commented 1 year ago

Move nbdev docs to sphinx docs, meaning that we will only program on .py files.

removed all #export cells in nbdev_nbs
other cells in nbdev_nbs were kept for nbdev_test, which is quite nice for automatic testing and debugging.

There are only a few code changes:

psm_readers: automatically detect mod_sep and underscore_for_ncterm
all unimod_ids were added into modification of MaxQuantReader and its inherited readers.

TODO: pdflatex failed in readthedocs, but this is not important.

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jalew188 commented 1 year ago

Complete code review is not recommended as there are too many code changes.