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MannLabs / alphadia

modular & open DIA search
https://alphadia.readthedocs.io
Apache License 2.0
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BUG: fix issue with zip strict & numba #258

Closed mschwoer closed 2 months ago

mschwoer commented 2 months ago

fix issues with numba and zip

for future reference: (non-complete) error message

Traceback (most recent call last):
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/threading.py", line 1045, in _bootstrap_inner
    self.run()
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/threading.py", line 982, in run
    self._target(*self._args, **self._kwargs)
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/site-packages/numba/core/dispatcher.py", line 442, in _compile_for_args
    raise e
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/site-packages/numba/core/dispatcher.py", line 375, in _compile_for_args
    return_val = self.compile(tuple(argtypes))
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/site-packages/numba/core/dispatcher.py", line 905, in compile
Exception in thread Thread-15 (numba_func_parallel):
Traceback (most recent call last):
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/threading.py", line 1045, in _bootstrap_inner
    self.run()
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/threading.py", line 982, in run
    self._target(*self._args, **self._kwargs)
    cres = self._compiler.compile(args, return_type)
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/site-packages/numba/core/dispatcher.py", line 442, in _compile_for_args
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/site-packages/numba/core/dispatcher.py", line 80, in compile
    raise e
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/site-packages/numba/core/dispatcher.py", line 375, in _compile_for_args
    status, retval = self._compile_cached(args, return_type)
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/site-packages/numba/core/dispatcher.py", line 94, in _compile_cached
    return_val = self.compile(tuple(argtypes))
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/site-packages/numba/core/dispatcher.py", line 905, in compile
Exception in thread Thread-16 (numba_func_parallel):
Traceback (most recent call last):
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/threading.py", line 1045, in _bootstrap_inner
    self.run()
  File "/fs/home/wallmann/conda-envs/alpha/lib/python3.11/threading.py", line 982, in run
    retval = self._compile_core(args, return_type)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/fs/home/wa