MannLabs / alphadia

modular & open DIA search
https://alphadia.readthedocs.io
Apache License 2.0
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Segmentation fault with timsTOF data #305

Closed GeorgWa closed 1 week ago

GeorgWa commented 1 month ago

Describe the bug Segemntation fault when processing timstof data

Logs

0:05:14.876202 INFO: Starting candidate selection
 66%|██████▌   | 306716/466673 [42:01<13:17, 200.66it/s]    Exception in thread Thread-290 (numba_func_parallel):
Traceback (most recent call last):
  File "/Users/georgwallmann/miniconda3/envs/alpha/lib/python3.11/threading.py", line 1045, in _bootstrap_inner
    self.run()
  File "/Users/georgwallmann/miniconda3/envs/alpha/lib/python3.11/site-packages/ipykernel/ipkernel.py", line 761, in run_closure
    _threading_Thread_run(self)
  File "/Users/georgwallmann/miniconda3/envs/alpha/lib/python3.11/threading.py", line 982, in run
    self._target(*self._args, **self._kwargs)
IndexError: index is out of bounds
 66%|██████▌   | 306757/466673 [42:02<13:57, 190.90it/s]
debug: IndexError: index 637346 is out of bounds for axis 0 with size 637346
 68%|██████▊   | 316799/466673 [42:54<13:14, 188.57it/s]Exception in thread Thread-288 (numba_func_parallel):
Traceback (most recent call last):
  File "/Users/georgwallmann/miniconda3/envs/alpha/lib/python3.11/threading.py", line 1045, in _bootstrap_inner
    self.run()
  File "/Users/georgwallmann/miniconda3/envs/alpha/lib/python3.11/site-packages/ipykernel/ipkernel.py", line 761, in run_closure
    _threading_Thread_run(self)
  File "/Users/georgwallmann/miniconda3/envs/alpha/lib/python3.11/threading.py", line 982, in run
    self._target(*self._args, **self._kwargs)
IndexError: index is out of bounds
 68%|██████▊   | 316839/466673 [42:54<13:12, 188.99it/s]
debug: IndexError: index 637346 is out of bounds for axis 0 with size 637346