MannLabs / alphamap

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
https://mannlabs.github.io/alphamap/
Apache License 2.0
76 stars 18 forks source link

problem in uploading file.tsv from DIANN #66

Closed serenacamerini73 closed 1 year ago

serenacamerini73 commented 1 year ago

I have uploaded tsv.file froma DIANN...all the single files appear to be selected but I have these messages with a final error:

Traceback (most recent call last): File "tornado\ioloop.py", line 741, in _run_callback ret = callback() File "tornado\ioloop.py", line 765, in _discard_future_result future.result() File "bokeh\server\session.py", line 67, in _needs_document_lock_wrapper result = func(self, *args, kwargs) File "bokeh\server\session.py", line 195, in with_document_locked return func(*args, *kwargs) File "bokeh\document\document.py", line 1183, in wrapper return doc._with_self_as_curdoc(invoke) File "bokeh\document\document.py", line 1169, in _with_self_as_curdoc return f() File "bokeh\document\document.py", line 1182, in invoke return f(args, kwargs) File "bokeh\document\document.py", line 972, in remove_then_invoke return callback(args, kwargs) File "panel\reactive.py", line 204, in _change_event self._process_events(events) File "panel\reactive.py", line 187, in _process_events self.param.set_param(self._process_property_change(events)) File "param\parameterized.py", line 1451, in setparam self._batch_call_watchers() File "param\parameterized.py", line 1578, in _batch_call_watchers watcher.fn(events) File "panel\param.py", line 739, in _replace_pane new_object = self.eval(self.object) File "panel\param.py", line 663, in eval return function(*args, *kwargs) File "param\parameterized.py", line 337, in _depends return func(args,**kw) File "alphamap\gui.py", line 1452, in upload_data upload_organism_info() File "alphamap\gui.py", line 1138, in upload_organism_info full_fasta = import_fasta(select_organism.value) File "alphamap\organisms_data.py", line 89, in import_fasta with urllib.request.urlopen(github_file) as response, open(os.path.join(DATA_PATH, fasta_name), 'wb') as out_file: PermissionError: [Errno 13] Permission denied: 'C:\Program Files (x86)\AlphaMap\alphamap\..\alphamap\data\mouse.fasta'