MannLabs / alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.
https://mannlabs.github.io/alphapept/
Apache License 2.0
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Still problems with processing of single timsTOF files #488

Closed mschwoer closed 2 years ago

mschwoer commented 2 years ago

Describe the bug The error described in #434 still occurs on machines with > 60 cores, regardless of the n_processes settings.

mschwoer commented 2 years ago

The root cause is that the n_processes settings are not propagated to score.py:train_RF(). Thus, the default value n_jobs: int = -1 is always used there, which makes GridSearchCV (according to doc) always use the maximum number of cores available. If this is bigger than 60, the crash described in #434 occurs.

Suggested solution:

straussmaximilian commented 2 years ago

Was closed with #489. Feel free to reopen in case anything else comes up.