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MannLabs / alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.
https://mannlabs.github.io/alphapept/
Apache License 2.0
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KeyError: 'Modified.Sequence' #563

Closed yanzhou-boy closed 2 weeks ago

yanzhou-boy commented 3 weeks ago

Dear creator, when I was building the prediction model, the DIA-NN database search data imported and the raw file dismounted showed errors as shown in the following figure. The 'Modified.Sequence' field data cannot be found in the DIA-NN data, what is the reason for this? I checked the file and found that it contained the 'Modified.Sequence' 1724322778794 column, but peptdeep still reported the error

straussmaximilian commented 2 weeks ago

It looks like this is meant for alphapeptdeep? Could you post the issue here?

https://github.com/MannLabs/alphapeptdeep