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MannLabs / alphapeptdeep

Deep learning framework for proteomics
Apache License 2.0
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Is it possible to predict 'a, x, c,z' fragment ions? #135

Closed hxxhust163 closed 3 months ago

hxxhust163 commented 5 months ago

Hi

I tried to predict a spectra library by precursor table, and I set the frag_types as 'b,y,a' in setting.yaml. I found the hdf file successfully saved, but translation to tsv failed.

I wonder if it is possible to predict 'a, x, c,z' fragment ions in spectra library? If it is. How can I translate the hdf to tsv? Thanks!

Following is the log: Screenshot from 2024-01-29 16-04-49

Best regards Xiaoxiang

jalew188 commented 5 months ago

Well, I did not train a model for ExD yet...

jalew188 commented 5 months ago

It is possible to predict c/z ions using AlphaPeptDeep.