Generate a library with nonspecific digestion rule? - Githubissues

MannLabs / alphapeptdeep

Deep learning framework for proteomics

Apache License 2.0

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Generate a library with nonspecific digestion rule? #144

Closed cctsou closed 7 months ago

cctsou commented 7 months ago

I am trying to generate a library using nonspecific digestion rule, the cutting rule I added was

([ARNCEQGHDILKMFPSTWYV])

Is it correct? I ran it and it has been stuck here for 20 hours with 100% memory usage (140GB), any advice?

2024-02-20 16:22:22> xxx/library.tsv does not exist, use default IRT_PEPTIDE_DF to translate irt
2024-02-20 16:22:22> Generating the spectral library ..

jalew188 commented 7 months ago

Due to memory issue in Python, we don't have features for nonspecific digestion.