Does AlphaPeptDeep support pre-digested FASTA files?

MannLabs / alphapeptdeep

Deep learning framework for proteomics

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Does AlphaPeptDeep support pre-digested FASTA files? #164

Closed Kokoushin closed 1 month ago

Kokoushin commented 2 months ago

Hi,

I have a pre-digested (trypsin) FASTA file and I want to create an in silico library. I tried using the GUI, but it failed. Here is my FASTA file. diann_001.txt

Best regards, Ko

GeorgWa commented 2 months ago

You can try setting the enzyme to no-cleave which should give you full protein peptides.