model_mgr_nce? what is nce?

[yc386]

Hello,

Thank you for providing .ipynb examples! I have been creating spectral libraries from FASTA files on Colab.

However, I was wondering what nce means. It seems that it has to be specified when predicting MS2, RT and CSS.

The default value appears to be 30.

Could you let me know what nce is?

Thank you.

[jalew188]

NCE is the Normalized Collision Energy or Collision Energy, the value depends on what you used in your instrument (or your RAW files).

If you don't know what is the NCE in your RAW files, just use nce=30.

[yc386]

ok, this is helpful. Thank you for your swift reply!