MannLabs / alphapeptstats

Python Package for the downstream analysis of mass-spectrometry-based proteomics data
https://alphapeptstats.readthedocs.io/en/latest/
Apache License 2.0
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Remove index column #362

Closed mschwoer closed 2 weeks ago

mschwoer commented 1 month ago

harmonize the input data w.r.t "index_column" to be able to rely on a fixed value throughout the codebase to reduce clutter and passing around arguments.

Will do the same for "gene_names" and "sample" columns.

The only downside is that the internal name is now shown at these places (could be fixed, but a little effort): image

image