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MannLabs / alphatims

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
https://doi.org/10.1016/j.mcpro.2021.100149
Apache License 2.0
81 stars 25 forks source link

Build(deps): Bump bokeh from 2.2.3 to 2.4.2 in /requirements #184

Closed dependabot[bot] closed 2 years ago

dependabot[bot] commented 2 years ago

Bumps bokeh from 2.2.3 to 2.4.2.

Changelog

Sourced from bokeh's changelog.

2021-11-22 2.4.2:

  • bugfixes:

    • #11422 [component: bokehjs] [BUG] DeserializationError when trying to change a DataTable's columns with CustomJS
    • #11800 [BUG] DeserializationError when plotting graphs
    • #11801 [component: bokehjs] [BUG] Log axis figures don't render if they're not visible at start
    • #11807 [component: bokehjs] Work around issues with initialization-time change discovery
    • #11808 Don't unnecessarily update node/edge renderers in graphs

  • tasks:

    • #11613 [component: docs] Cache-bust custom.css for docs
    • #11791 [component: docs] Update issue template to use new GH forms
    • #11761 [component: docs] Clarify use of color in first steps guide
    • #11762 [component: docs] Replace slash with backslash for PS commands
    • #11767 [component: bokehjs] Upgrade jquery-ui to resolve security concerns
    • #11781 [component: examples] fix transform jitter example
    • #11786 bokeh 2.4.2 backports
    • #11790 [component: build] Bryanv/pin sphinx 42
    • #11797 Add OS to bokeh info
    • #11805 More 3.0 -> 2.4.2 backports
    • #11810 [component: docs] Update docs for new issue forms
    • #11824 Updates for release

2021-10-13 2.4.1:

  • bugfixes:

    • #11119 [component: bokehjs] [BUG] varea_stack() and vline_stack() fails to update correctly when new source data is different length
    • #11625 [component: tests] [BUG] Codebase test failures in Windows
    • #11627 [BUG] mypy tests fail in Windows
    • #11629 [BUG] Hover tool takes long time to render
    • #11633 [component: bokehjs] [BUG] RangesUpdate not emitted when using xwheel_pan
    • #11645 [component: bokehjs] [BUG] bokeh init creates a package.json which refers to the deprecated Bokeh JS node package
    • #11646 [component: bokehjs] [BUG] Using band_hatch_pattern with images doesn't work
    • #11661 [component: bokehjs] [BUG] Issue with line rendering when selecting indices
    • #11670 [component: bokehjs] [BUG] Duplicate change events for autocomplete_input
    • #11679 [BUG] Parallel Plot example with output_backend="webgl" not working
    • #11713 [component: docs] Documentation builds are failing in CI
    • #11644 [component: bokehjs] Actually fix clipping in SVG <text> nodes

  • tasks:

    • #11617 [component: docs] Update Team link in footer
    • #11658 [component: build] Support "pip install" from sdist
    • #11618 [component: tests] Reduce Tornado imports
    • #11628 [component: docs] Correct path in dev guide server instructions
    • #11652 [component: build] Update bokehjs' dependencies
    • #11668 [component: docs] Add information about mathjax bundle
    • #11681 [NO SQUASH] Batch of 3.0 -> 2.4 backports
    • #11712 [component: tests] Upgrade baselines to Chrome 94
    • #11722 [component: tests] Update visual baselines on MacOS
    • #11724 [NO SQUASH] More 3.0 -> 2.4 backports

... (truncated)

Commits
  • ad33147 Deployment updates for release 2.4.2
  • 17578f3 also update latest=2.4.2
  • e3e182a Merge deployment staging branch staging-2.4.2rc1
  • 6bcda8a Deployment updates for release 2.4.2rc1
  • 638d3ee Updates for release (#11824)
  • 56eef3c Merge deployment staging branch staging-2.4.2dev1
  • 99d1fc0 Deployment updates for release 2.4.2dev1
  • 23b5134 Provide complete model context for deserialization of instances (#11469)
  • 64fa075 Add OS to bokeh info (#11797)
  • da7d07a Don't unnecessarily update node/edge renderers in graphs (#11808)
  • Additional commits viewable in compare view


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dependabot[bot] commented 2 years ago

Superseded by #198.