No plots are shows when using the GUI in Google Chrome or Firefox

[MarcIsak]

Describe the bug I have created an 'alphatims docker image' (see attachment) for alphatims 0.3.2 that I run in WSL2, and I can manage to port the gui to my browser (localhost:4500). However, once I have uploaded a *.d file, there are no plots displayed. I can't see any error messages being displayed either (see attached log)

Dockerfile to create the alphatims image (zipped)

Dockerfile.zip

Setup file run by CMD in dockerfile setup.zip

To Reproduce Steps to reproduce the behavior (more detailed in the Dockerfile):

1. 'conda create -n alphatims python=3.8'
2. 'conda install -n alphatims pip'
3. 'conda activate alphatims'
4. pip install 'alphatims[plotting]'
5. Run alphatims gui --port:4500
6. Open browser and load http://localhost:4500
7. Load either .d folder or .hdf file

Expected behavior Expect plots to appear once the file is uploaded in the gui. The plots are compressed and do not show anything.

Logs Please provide the log (see the AlphaTims terminal on where to find it). log_20220607125907.txt

Screenshots If applicable, add screenshots to help explain your problem.

Version (please complete the following information):

• Installation Type: pip
• If no log is available, provide the following:
  • Platform information
    • system Linux
    • release 5.10.102.1-microsoft-standard-WSL2
    • version #1 SMP Wed Mar 2 00:30:59 UTC 2022
    • machine x86_64
    • processor [e.g. i386]
    • cpu count 20
  • Python information:
    • alphatims version 0.3.2
    • alphatims - 0.3.2
    • bokeh - 2.4.3
    • click - 8.1.3
    • datashader - 0.14.0
    • h5py - 3.7.0
    • hvplot - 0.8.0
    • numba - 0.55.2
    • pandas - 1.4.2
    • psutil - 5.9.1
    • python - 3.8.13
    • python-lzf -
    • pyzstd - 0.15.2
    • selenium - 4.2.0
    • tqdm - 4.64.0

Additional context Add any other context about the problem here. Attached log files or upload data files if possible.

[swillems]

Thanks for the feedback. Can you try to update step 4 to: pip install 'alphatims[stable,plotting-stable]' and see if this works better? (You can also update the current environment with an --upgrade flag after the pip install ...)?

[MarcIsak]

Hi, I replaced 'pip install alphatims[plotting]' with pip install 'alphatims[stable, plotting-stable]' but it results in an error when I run: alphatims gui --port=4500. I have attached the log file log_20220607143209.txt

[swillems]

Right, I forgot about that one... Should hopefully be fixed by adding a step 4.5: pip install jinja2==3.0.2 --upgrade

[swillems]

Hey @MarcIsak . Did you get it working? If yes, I will close this issue. If not, you can try with the latest release (v1.0.0), although you should still use the stable installation (this is now explicitly mentioned in the readme as well).