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MannLabs / alphatims

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
https://doi.org/10.1016/j.mcpro.2021.100149
Apache License 2.0
81 stars 25 forks source link

1.0.5 GUI wont start #242

Closed kronigert closed 1 year ago

kronigert commented 1 year ago

Hello,

I just stumpled across the following error: I installed version 1.0.5. of AlphaTIMS via the GUI installer. When I try to open AlphaTIMS with the GUI it wont open (tried it with several browsers set as default). I put the cmd-log of the error message of the quitting below. As this error does not occur with version 1.0.4. of AlphaTIMS I dont think something is wrong with my setup.

Thank you for the cool software. All the best, Tobias

Logs Traceback (most recent call last): File "alphatims_pyinstaller.py", line 14, in File "", line 991, in _find_and_load File "", line 975, in _find_and_load_unlocked File "", line 671, in _load_unlocked File "PyInstaller\loader\pyimod03_importers.py", line 495, in exec_module File "alphatims\gui.py", line 15, in import alphatims.bruker File "", line 991, in _find_and_load File "", line 975, in _find_and_load_unlocked File "", line 671, in _load_unlocked File "PyInstaller\loader\pyimod03_importers.py", line 495, in exec_module File "alphatims\bruker.py", line 277, in @alphatims.utils.njit(nogil=True) File "alphatims\utils.py", line 444, in njit import numba File "", line 991, in _find_and_load File "", line 975, in _find_and_load_unlocked File "", line 671, in _load_unlocked File "PyInstaller\loader\pyimod03_importers.py", line 495, in exec_module File "numba__init.py", line 190, in _ensure_critical_deps() File "numba__init__.py", line 133, in _ensure_critical_deps import scipy File "", line 991, in _find_and_load File "", line 975, in _find_and_load_unlocked File "", line 671, in _load_unlocked File "PyInstaller\loader\pyimod03_importers.py", line 495, in exec_module File "scipy\init.py", line 76, in _delvewheel_init_patch_1_0_1() File "scipy\init__.py", line 67, in _delvewheel_init_patch_1_0_1 os.add_dll_directory(libs_dir) File "os.py", line 1109, in add_dll_directory FileNotFoundError: [WinError 2] Das System kann die angegebene Datei nicht finden: 'C:\Users\XXX.XXX\AppData\Local\Programs\AlphaTims\scipy.libs' [20160] Failed to execute script 'alphatims_pyinstaller' due to unhandled exception!

adang1345 commented 1 year ago

To the developer: This is a bug in PyInstaller that was fixed in version 5.6 (https://github.com/pyinstaller/pyinstaller/pull/7170). It looks like that needs to be updated here: https://github.com/MannLabs/alphatims/blob/0f1275aaa779dc7c7e3dbf2707f14356b08c9e4b/misc/one_click_windows/create_installer_windows.bat#L11

sander-willems-bruker commented 1 year ago

Hi @kronigert . Thanks for the report. Thanks to @adang1345 's suggestion, the latest pyinstaller is now used, whihc fixes the issue in v1.0.6.