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MannLabs / alphatims

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
https://doi.org/10.1016/j.mcpro.2021.100149
Apache License 2.0
81 stars 26 forks source link

Build(deps): Bump bokeh from 2.2.3 to 3.0.3 in /requirements #248

Open dependabot[bot] opened 1 year ago

dependabot[bot] commented 1 year ago

Bumps bokeh from 2.2.3 to 3.0.3.

Changelog

Sourced from bokeh's changelog.

2022-12-09 3.0.3:

  • bugfixes:

    • #12583 [component: bokehjs] [BUG] Nested gridplot collapses figures
    • #12611 [BUG] get_screenshot_as_png
    • #12627 [BUG] sizing_mode="stretch_both" fails since 3.0.0
    • #12633 [component: bokehjs] [BUG] Styles are not applied to model in Firefox
    • #12640 [component: bokehjs] [BUG] Embedded plot not sized correctly if not visible from the start
    • #12623 Ensure change callback manipulation is threadsafe

  • tasks:

    • #12591 [component: tests] Many CoverageWarning: Couldn't parse (...) in unit tests
    • #12595 [component: docs] More neutral install instructions
    • #12607 output_notebook uses a deprecated API
    • #12608 models.util.structure uses deprecated API
    • #12641 [component: docs] Links to many examples are out of date
    • #12646 [FEATURE] Add a find_stack_level to deprecation.py
    • #12351 Updates to Docker image building and testing
    • #12547 [component: docs] Added metadata to glyphs.py, multi_legend.py, multi_scale.py
    • #12605 Replace flake8 with ruff
    • #12620 Remove LGTM
    • #12630 Update CodeQL action
    • #12636 Add CodeQL config
    • #12639 Disable docker from wheel integration tests
    • #12645 CodeQL: remove import linter hack
    • #12654 Resolve issues with code quality checks
    • #12659 [component: docs] Adapt Bokeh logo for dark theme and add docs badge in README.md
    • #12662 Backports for 3.0.3
    • #12663 Updates for 3.0.3

2022-11-14 3.0.2:

  • bugfixes:

    • #4930 interaction between tooltips and gridplots
    • #12429 [component: bokehjs] [BUG] Line selection does not render the unselected end line segments
    • #12531 [component: bokehjs] [BUG] latex in titles - upright characters that should be italic
    • #12551 [component: tests] bokehjs' unit tests fail on chromium 107
    • #12554 [component: docs] Custom.js needs update for switcher
    • #12578 [component: bokehjs] [BUG] gridplot reset button does not reset all figures
    • #12585 [component: bokehjs] [BUG] line_policy='none' for HoverTool does not generate any tooltip
    • #12587 [component: server] [BUG] Don't delete importlib.metadata in init.py
    • #12593 [BUG] Guard numpy.typing.ArrayType with if TYPE_CHECKING

  • tasks:

    • #12557 [component: docs] Need automation for updating switcher.json
    • #12560 [FEATURE] remove mock
    • #12562 [BUG] Tests: "python" is not a guaranteed executable
    • #12566 [component: docs] Fix dates and typo in release docs for 3.0.0/3.0.1
    • #12569 [component: build] Add Python 3.11 to CI
    • #12571 [component: tests] Remove flaky from integration tests

... (truncated)

Commits
  • e571742 Deployment updates for release 3.0.3
  • 5677393 Merge deployment staging branch staging-3.0.3rc1
  • e43f59b Deployment updates for release 3.0.3rc1
  • a64b825 Updates for 3.0.0 (#12663)
  • d3f86bb Backports for 3.0.3 (#12662)
  • 9fbab87 Merge deployment staging branch staging-3.0.2
  • bba83ab Deployment updates for release 3.0.2
  • 7a5fb54 Fix docs custom.js for switcher (#12604)
  • 2bd3d38 Merge deployment staging branch staging-3.0.2rc1
  • 841bb10 Deployment updates for release 3.0.2rc1
  • Additional commits viewable in compare view


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