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MannLabs / structuremap

Python package for investigating the structural context of PTMs
Apache License 2.0
27 stars 9 forks source link

Updated processing.py to check versions available on AlphaFoldDB #14

Closed APAJanssen closed 1 year ago

APAJanssen commented 1 year ago

Added a simple loop that per protein searches for the latest release (usually v4) and uses that information. Also incorporates an altered parsing of the changed JSON schema of the PAE of v3 and v4 models. Benefit of these changes is that the module now works for all species in the AlphaFold DB, many of which lack a v1 version.

ibludau commented 1 year ago

Thanks for the nice update - looks good to me!