interop with SummarizedExperiment

ManonMartin / limpca

https://manonmartin.github.io/limpca/

1 stars 2 forks source link

interop with SummarizedExperiment #24

Closed ManonMartin closed 7 months ago

ManonMartin commented 7 months ago

create a function to convert a SummarizedExperiment (se) to a lmpDataList and perform the necessary checks. arguments: se, assay_name, outcomes, design, formula

rem:

if "formula" is present in metadata, then it is extracted automatically
if outcomes, design or formula is not NULL, then they are used in place of se values

ManonMartin commented 7 months ago

Created the functions data2lmpDataList and lmpDataListCheck to format the data appropriately before plotting or running limpca