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MarWoes / wg-blimp

wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
GNU Affero General Public License v3.0
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Broken Snakefile (invalid name for input, output, ...): insert is reserved for internal use #6

Closed MarWoes closed 4 years ago

MarWoes commented 4 years ago

The current version of snakemake-minimal is not compatible with the latest wg-blimp version because wg-blimps Snakefile contains a keyword (insert). This should be resolvable by simply renaming all occurrences of insert with something else.

For the time being, this issue may be worked around by installing an older, compatible version, for example by using: conda install snakemake-minimal=5.8.1 for existing installations, or to use conda create -n wg-blimp wg-blimp python=3.6.7 r-base=3.6.2 snakemake-minimal=5.8.1 for fresh installations.

MarWoes commented 4 years ago

Fixed by e6855e434f5b5fe8f260be657d3d53f14b91aead

MarWoes commented 4 years ago

Included in release v0.9.6